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Detailed information on CNT30379228


BLAST search results

BLAST vs Swiss-Prot:
sp|P33629|TBA_PRUDU, E-value = 4e-142

BLAST vs NONCODE:
NONGMAT000219, E-value = 3e-80

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Manihot esculentaOryza sativa35.3244.1383.77308forward
CNT30677979Manihot esculentaSetaria viridis51.9547.7385.65453forward
CNT30522101Manihot esculentaSetaria italica59.448.8785.91518forward
CNT30640127Manihot esculentaNymphaea colorata30.0532.8389.69262forward
CNT30533600Manihot esculentaEucalyptus grandis37.8488.2486.97330forward
CNT30547493Manihot esculentaIpomoea triloba60.7847.4187.55530forward
CNT30702815Manihot esculentaQuercus lobata18.8144.5789.63164forward
CNT30371538Manihot esculentaArabidopsis thaliana49.7791.3787.56434forward
CNT30501067Manihot esculentaCoffea canephora34.5241.6385.05301forward
CNT30727923Manihot esculentaCorchorus capsularis51.4937.9290.2449forward
CNT3071007Manihot esculentaQuercus suber43.4674.1785.75379forward
CNT30507454Manihot esculentaNicotiana attenuata43.8158.8686.91382forward
CNT30712730Manihot esculentaGlycine max45.6477.7387.19398forward
CNT3098615Manihot esculentaSolanum tuberosum30.9652.6385.56270forward
CNT30177039Manihot esculentaSecale cereale68.9244.2687.35601forward
CNT30284381Manihot esculentaTriticum aestivum50.1157.287.87437forward
CNT30224141Manihot esculentaHordeum vulgare38.995084.41340forward
CNT30391405Manihot esculentaTriticum turgidum57.866.485.71504forward
CNT3086234Manihot esculentaVigna radiata31.6552.0887.68276forward
CNT30555417Manihot esculentaOryza glaberrima52.0656.2682.16454forward
CNT30144939Manihot esculentaMedicago truncatula2544.7689.45218forward
CNT30439881Manihot esculentaAegilops tauschii56.6564.4186.44494forward
CNT30247087Manihot esculentaAvena sativa46.955.8789.49409forward
CNT30655883Manihot esculentaTriticum dicoccoides61.9375.6387.78540forward
CNT3059767Manihot esculentaArabidopsis lyrata27.4133.7187.03239forward
CNT30265526Manihot esculentaBrassica rapa52.9846.5389.83462forward
CNT30445643Manihot esculentaSaccharum spontaneum70.6469.4586.2616forward
CNT30136973Manihot esculentaLolium perenne27.7557.6288.84242forward
CNT30953Manihot esculentaZea mays65.8360.6886.93574forward
CNT30229012Manihot esculentaAnanas comosus27.1828.5987.34237forward
CNT30624589Manihot esculentaDaucus carota14.5625.688.19127forward
CNT30689745Manihot esculentaTriticum urartu50.1157.3588.33437forward
CNT30721351Manihot esculentaTriticum spelta28.7837.9285.26251forward
CNT30340361Manihot esculentaEragrostis tef19.3832.3184.02169forward
CNT30361562Manihot esculentaSorghum bicolor55.9649.3486.27488forward
CNT30597072Manihot esculentaOryza meridionalis39.1146.9782.4341forward
CNT30360524Manihot esculentaLactuca sativa29.4740.0982.49257forward
CNT30371316Manihot esculentaOryza glumipatula52.0638.4782.16454forward
CNT30482824Manihot esculentaChara braunii31.5436.1481.82275forward
CNT30430260Manihot esculentaPapaver somniferum27.0640.5588.14236forward
CNT30570163Manihot esculentaVitis vinifera53.2156.0488.36464forward
CNT3052700Manihot esculentaAmborella trichopoda17.4348.189.47152forward
CNT30106557Manihot esculentaOryza longistaminata21.989.2581.68191forward
CNT3024728Manihot esculentaPopulus trichocarpa33.1435.5992.04289forward
CNT30119652Manihot esculentaCitrus clementina25.342982.81221forward
CNT30148523Manihot esculentaBrachypodium distachyon27.5237.2180.83240forward
CNT30104125Manihot esculentaOryza rufipogon64.1142.3281.75559forward
CNT30575848Manihot esculentaOryza barthii39.1137.9382.99341forward
CNT30582828Manihot esculentaEchinochloa crusgalli67.6668.7685.93590forward
CNT30117950Manihot esculentaOryza nivara56.5459.4781.95493forward
CNT30558847Manihot esculentaPanicum hallii44.8452.9885.93391forward
CNT30333509Manihot esculentaCynara cardunculus27.0642.9180.93236forward
CNT30724701Manihot esculentaLupinus angustifolius69.3853.5989.26605forward

Expression of CNT30379228

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MNKTRGKKQHASYAKEIKHHRNFLIFFIFTIIALS*

>peptide 2 (32 aa)
MVRLVLIVATAAFTSLGTTSPRYIKQQAMYLP*

>peptide 3 (28 aa)
MGPSWSGIQSHPRSEHHQTSEMQSRKRSP

>peptide 4 (75 aa)
MTRITLGHHRRGLKSTVCDFSNRELFMVSLLSRDNWCIGGKHEVNSGVWDQVGLEFSHIHVQSTIKPQRCSQGRDH

Sequence

>CNT30379228
GGAGAATAGAAATTGGGAAATATTGATCTAAAATTTAAATTTAAGGCTAAACAGAAATAGCATTCAATACTCGGACAACAGTACAATTCAACACAGAATT
AAGCATGCCTGAAGCAAGATAGCTTCAAATAATTGCATACACTCAAAATGAACAAAACACGGGGAAAAAAGCAGCACGCATCATATGCTAAAGAGATAAA
GCACCACAGGAACTTCTTAATATTCTTCATCTTCACCATCATCGCCCTCAGCTGATTCAGCACCAACCTCTTCATAATCCTTTTCAAGGGCAGCAAGATC
CTCACGAGCCTCAGAGAACTCTCCTTCCTCCATACCCTCACCCACATACCAGTGCACAAAAGCACGCTTGGCATACATGAGGTCAAACTTGTGGTCAATT
CTTGAGAACACCTCAGCAACACTGGTCGAGTTGGAGATCATGCACACAGCCCTCTGAACCTTGGCAAGGTCACCGCCAGGAACAACAGTGGGTGGCTGGT
AGTTGATACCGCACTTGAATCCAGTTGGGCACCAGTCAACAAACTGAATGGTGCGCTTGGTCTTAATAGTGGCAACTGCAGCATTCACATCCTTGGGCAC
AACATCACCACGGTACATCAAGCAGCAGGCCATGTATTTACCATGACGAGGATCACACTTGGCCATCATAGAAGAGGGCTCAAAAGCACTGTTTGTGATT
TCAGCAACAGAGAGTTGTTCATGGTAAGCCTTCTCAGCAGAGATAACTGGTGCATAGGAGGAAAGCATGAAGTGAATTCTGGGGTATGGGACCAAGTTGG
TCTGGAATTCAGTCACATCCACGTTCAGAGCACCATCAAACCTCAGAGATGCAGTCAAGGAAGAGATCACCT