Detailed information on CNT30721298


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 3e-54

BLAST vs NONCODE:
NONGMAT000219, E-value = 5e-36

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678752Triticum speltaSetaria viridis102.7747.1188.92334forward
CNT30501067Triticum speltaCoffea canephora38.4617.2989.6125forward
CNT30727924Triticum speltaCorchorus capsularis38.4613.0891.2125forward
CNT30712730Triticum speltaGlycine max37.8524.0291.87123forward
CNT3098615Triticum speltaSolanum tuberosum38.4624.3793.6125forward
CNT3085161Triticum speltaVigna radiata34.7716.1290.27113forward
CNT30136973Triticum speltaLolium perenne38.773096.83126forward
CNT3041219Triticum speltaChlamydomonas reinhardtii37.2321.2388.43121forward
CNT30570286Triticum speltaVitis vinifera34.7722.9784.96113forward
CNT30119652Triticum speltaCitrus clementina30.4612.9982.8399forward

Expression of CNT30721298

SRR9114152: 0.0 RPKM

Peptides detected in this lncRNA

>peptide 1 (58 aa)
GWLVVDTTLETSGAPVHKLDGALRLDGGHSSVDILGHNITTEGSKALLVISATESCSW*

>peptide 2 (29 aa)
MVRFVLMVATAALTSLGTTSPRKARRRCW*

Sequence

>CNT30721298
CTGGGTGGCTGGTAGTTGATACCACACTTGAAACCAGTGGGGCACCAGTCCACAAACTGGATGGTGCGCTTCGTCTTGATGGTGGCCACAGCAGCGTTGA
CATCCTTGGGCACAACATCACCACGGAAGGCTCGAAGGCGCTGTTGGTGATCTCAGCGACAGAGAGCTGCTCATGGTAAGCCTTCTCAGCTGAGATCACT
GGGGCATAGGAGGAAAGCATGAAGTGGATCCTCGGGTAGGGCACCAGGTTGGTCTGAAACTCGTTCACATCAACATTCAGAGCACCATCAAACCTCAGGG
AAGCAGTCAGGGATGAGATGACCTG