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Detailed information on CNT30655223


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAG1|TBA1_GOSHI, E-value = 1e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Rosa chinensisOryza sativa70.4736.0279.33179forward
CNT30640127Rosa chinensisNymphaea colorata67.3221.4384.21171forward
CNT30501067Rosa chinensisCoffea canephora56.6919.9282.64144forward
CNT30709081Rosa chinensisGlycine max67.3222.7485.96171forward
CNT30296175Rosa chinensisTriticum aestivum68.1159.2583.24173forward
CNT30220716Rosa chinensisHordeum vulgare38.5842.9883.6798forward
CNT30391993Rosa chinensisTriticum turgidum68.1172.6983.24173forward
CNT30237104Rosa chinensisBrassica oleracea24.4119.1490.3262forward
CNT30435344Rosa chinensisAegilops tauschii44.4936.3383.19113forward
CNT3059767Rosa chinensisArabidopsis lyrata26.779.5989.7168forward
CNT3075316Rosa chinensisBrassica juncea44.4938.0588.5113forward
CNT30136247Rosa chinensisLolium perenne46.0638.2482.91117forward
CNT3041150Rosa chinensisChlamydomonas reinhardtii20.8711.6292.4553forward
CNT30210906Rosa chinensisHelianthus annuus35.0434.184.2789forward
CNT30683531Rosa chinensisTriticum urartu44.4936.8184.07113forward
CNT30721349Rosa chinensisTriticum spelta44.4937.6784.07113forward
CNT30596030Rosa chinensisOryza meridionalis44.4947.0885.84113forward
CNT30371316Rosa chinensisOryza glumipatula70.4715.1785.47179forward
CNT3052700Rosa chinensisAmborella trichopoda31.525.3288.7580forward
CNT30331419Rosa chinensisDioscorea rotundata23.6221.3593.3360forward
CNT30148523Rosa chinensisBrachypodium distachyon70.8727.9181.67180forward
CNT30575645Rosa chinensisOryza barthii75.222.5284.82191forward
CNT30726253Rosa chinensisLupinus angustifolius42.1329.485.98107forward
CNT3040082Rosa chinensisMarchantia polymorpha69.2941.982.95176forward

Expression of CNT30655223

Peptides detected in this lncRNA

>peptide 1 (75 aa)
VQGSAADVVNGLIIEQNRHIGVLKQRMSGEHTVIWLHNRCGNLRRRINSESELGLFPIVHRKPLQQRSTISFPMV*

>peptide 2 (48 aa)
PGIGGRCRKWPHYRAKQTHRCAQAANEWRAHCYMAPQQMWKPEEKDKQ*

Sequence

>CNT30655223
GTCCAGGGATCGGCGGCAGATGTCGTAAATGGCCTCATTATCGAGCAAAACAGACACATCGGTGTGCTCAAGCAGCGAATGAGTGGAGAGCACACTGTTA
TATGGCTCCACAACAGATGTGGAAACCTGAGGAGAAGGATAAACAGTGAATCCGAGCTTGGACTTTTTCCCATAGTCCACAGAAAGCCTCTCCAGCAGAG
ATCGACGATCTCTTTCCCGATGGTGTAGTGGCCGCGAGCGAAGTTGTTGGCGGC