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Detailed information on CNT30507454


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 5e-88

BLAST vs NONCODE:
NONGMAT000219, E-value = 3e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677979Nicotiana attenuataSetaria viridis43.329.6186.12281forward
CNT30522101Nicotiana attenuataSetaria italica43.326.5186.83281forward
CNT30533600Nicotiana attenuataEucalyptus grandis46.5380.7586.09302forward
CNT30547577Nicotiana attenuataIpomoea triloba51.9362.5285.76337forward
CNT30501067Nicotiana attenuataCoffea canephora47.342.4687.3307forward
CNT30729860Nicotiana attenuataCorchorus capsularis56.0939.3587.91364forward
CNT3071007Nicotiana attenuataQuercus suber49.4662.8284.11321forward
CNT30379228Nicotiana attenuataManihot esculenta58.8643.8186.91382forward
CNT30709081Nicotiana attenuataGlycine max52.0844.9583.43338forward
CNT3098615Nicotiana attenuataSolanum tuberosum53.1667.2592.17345forward
CNT30177039Nicotiana attenuataSecale cereale54.726.1487.89355forward
CNT30294619Nicotiana attenuataTriticum aestivum44.2234.0988.85287forward
CNT30223592Nicotiana attenuataHordeum vulgare15.125.1385.7198forward
CNT30391405Nicotiana attenuataTriticum turgidum54.746.7787.32355forward
CNT3085161Nicotiana attenuataVigna radiata53.9349.9384.57350forward
CNT30555281Nicotiana attenuataOryza glaberrima53.7842.1581.38349forward
CNT30144688Nicotiana attenuataMedicago truncatula28.251.5585.79183forward
CNT30439881Nicotiana attenuataAegilops tauschii58.8649.886.65382forward
CNT30247794Nicotiana attenuataAvena sativa64.4161.0283.97418forward
CNT30655883Nicotiana attenuataTriticum dicoccoides48.3843.9889.17314forward
CNT3075301Nicotiana attenuataBrassica juncea16.6420.3493.52108forward
CNT30265526Nicotiana attenuataBrassica rapa39.7525.9885.66258forward
CNT30445643Nicotiana attenuataSaccharum spontaneum58.5542.8485380forward
CNT30136973Nicotiana attenuataLolium perenne35.4454.7688.7230forward
CNT30953Nicotiana attenuataZea mays58.440.0684.96379forward
CNT3041219Nicotiana attenuataChlamydomonas reinhardtii24.1927.5484.71157forward
CNT30689745Nicotiana attenuataTriticum urartu35.4430.1890230forward
CNT30721351Nicotiana attenuataTriticum spelta34.9834.2985.9227forward
CNT30362155Nicotiana attenuataSorghum bicolor44.2226.3186.41287forward
CNT30597072Nicotiana attenuataOryza meridionalis41.9137.4782.35272forward
CNT30359416Nicotiana attenuataLactuca sativa28.0425.4583.52182forward
CNT30371316Nicotiana attenuataOryza glumipatula53.7829.5881.38349forward
CNT30570163Nicotiana attenuataVitis vinifera58.8646.1486.13382forward
CNT3052700Nicotiana attenuataAmborella trichopoda21.5744.385140forward
CNT30119652Nicotiana attenuataCitrus clementina34.2129.1381.53222forward
CNT30148523Nicotiana attenuataBrachypodium distachyon34.3634.5782.96223forward
CNT30104256Nicotiana attenuataOryza rufipogon53.7826.8581.66349forward
CNT30575645Nicotiana attenuataOryza barthii42.2232.3182.85274forward
CNT30582828Nicotiana attenuataEchinochloa crusgalli53.7840.6885.1349forward
CNT30117950Nicotiana attenuataOryza nivara53.7842.181.66349forward
CNT30558847Nicotiana attenuataPanicum hallii54.748.185.07355forward
CNT30726259Nicotiana attenuataLupinus angustifolius55.7843.6785.91362forward

Expression of CNT30507454

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MVATAALTSFGTTSPRNIRQQAMYLPWRGSHLTIIEEGSKALFVISATESCSW*

Sequence

>CNT30507454
GGAAATCATATAGACCATGCACGAAACGAAATGTAAAGTAACCAGTCAAAAGAACATATTTTGACTTCAACAACAGCATAGTTCAGTTTAGAAAGACACA
ATAGGAAATACTAATTGCTACAAGCGCAATAGAAAACCATCAACCGAACAACACAAAAACAAACACATTAGACCACAATAGTCACTCAATACTCATCTCC
TTCATCACCCCCTTCTTCATCGTCAACTTCAGCACCAACCTCCTCATAATCCTTTTCCAGAGCAGCAAGGTCACCTCCAGGGACAACAGTTGGTGGTTGG
TAGTTGATACCACACTTGAATCCAGTAGGGCACCAGTCAACAAATTGGATAGTACGCTTGGTCTTGATGGTGGCCACAGCAGCATTGACATCCTTTGGTA
CAACATCACCACGGAACATAAGGCAGCAGGCCATGTACTTGCCATGGCGAGGATCACACTTGACCATCATAGAAGAGGGTTCAAAGGCACTGTTTGTGAT
CTCTGCTACTGAGAGCTGCTCATGGTAAGCCTTCTCAGCTGAAATGACTGGAGCATAGGAGGAAAGCATAAAATGGATTCTGGGATATGGTACAAGGTTG
GTCTGGAATTCATTCACATCAACATTCAACGCTCCATCGAACCTCAAAG