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Detailed information on CNT30391405

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 9e-121

BLAST vs NONCODE:
NONGMAT000219, E-value = 2e-65

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30677979	Triticum turgidum	Setaria viridis	58.76	47	91.48	446	forward
CNT30533600	Triticum turgidum	Eucalyptus grandis	43.48	88.24	89.7	330	forward
CNT30547493	Triticum turgidum	Ipomoea triloba	57.44	39	87.16	436	forward
CNT30501067	Triticum turgidum	Coffea canephora	40.97	43.02	85.85	311	forward
CNT30729860	Triticum turgidum	Corchorus capsularis	61.92	50.81	85.53	470	forward
CNT3071007	Triticum turgidum	Quercus suber	49.8	73.97	82.54	378	forward
CNT30379228	Triticum turgidum	Manihot esculenta	66.4	57.8	85.71	504	forward
CNT30507454	Triticum turgidum	Nicotiana attenuata	46.77	54.7	87.32	355	forward
CNT3098615	Triticum turgidum	Solanum tuberosum	32.02	47.37	89.71	243	forward
CNT30184570	Triticum turgidum	Secale cereale	61.13	73.19	98.06	464	forward
CNT30294619	Triticum turgidum	Triticum aestivum	63.5	57.24	99.38	482	forward
CNT3085161	Triticum turgidum	Vigna radiata	37.68	40.8	85.66	286	forward
CNT30555384	Triticum turgidum	Oryza glaberrima	64.69	57.43	90.63	491	forward
CNT30144688	Triticum turgidum	Medicago truncatula	26.75	57.18	86.7	203	forward
CNT30439881	Triticum turgidum	Aegilops tauschii	67.19	66.49	97.06	510	forward
CNT30247895	Triticum turgidum	Avena sativa	56.79	57.47	91.42	431	forward
CNT30662251	Triticum turgidum	Triticum dicoccoides	72.6	81.27	99.64	551	forward
CNT30445643	Triticum turgidum	Saccharum spontaneum	67.85	58.06	90.29	515	forward
CNT30953	Triticum turgidum	Zea mays	67.85	54.44	90.29	515	forward
CNT30684179	Triticum turgidum	Triticum urartu	35.18	42.58	100	267	forward
CNT30721351	Triticum turgidum	Triticum spelta	33.07	37.92	100	251	forward
CNT30340361	Triticum turgidum	Eragrostis tef	23.32	33.84	91.53	177	forward
CNT30362155	Triticum turgidum	Sorghum bicolor	54.28	37.76	89.81	412	forward
CNT30597072	Triticum turgidum	Oryza meridionalis	45.19	47.25	90.38	343	forward
CNT30371316	Triticum turgidum	Oryza glumipatula	62.98	40.51	90.79	478	forward
CNT3052700	Triticum turgidum	Amborella trichopoda	20.42	49.05	85.16	155	forward
CNT30106557	Triticum turgidum	Oryza longistaminata	26.22	92.99	91.96	199	forward
CNT30104125	Triticum turgidum	Oryza rufipogon	67.98	39.06	90.31	516	forward
CNT30575848	Triticum turgidum	Oryza barthii	45.45	38.38	91.01	345	forward
CNT30582828	Triticum turgidum	Echinochloa crusgalli	67.85	60.02	90.49	515	forward
CNT30117950	Triticum turgidum	Oryza nivara	65.61	60.07	90.76	498	forward
CNT30558847	Triticum turgidum	Panicum hallii	53.36	54.88	91.85	405	forward

Expression of CNT30391405

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MGVGKPDNMHIDQGAKQVQTYHRFIQHNRL*

>peptide 2 (34 aa)
MREKTSTTLVELEIMHTALWTLARSPPGTTLGGW*

>peptide 3 (59 aa)
MVRFVLMVATAALTSLGTTSPRYMRQQAMYLPWRGSHLAIMEEGSKALLVISATESCSW*

Sequence

>CNT30391405
CACCAACCAAATTACACGAAGAAACAATGCAGATACTGAAACAGGGAAATGGTGATGGACAGCAGCAGAGGCTATGGGTGTAGGCAAACCAGATAACATG
CATATTGACCAAGGTGCGAAGCAGGTTCAAACATACCACAGGTTCATACAACACAACAGGTTGTAAACCAAACACCACACAGCAAACATTCAAACAGACA
GACAACAGATAAAGCCGCTTGGGCAGATCACAGGATAGTAGTAGACGAAGGGACGCTTGACGTACATCAGGTCGAACTTGTGGTCGATGCGGGAGAAGAC
CTCGACAACGCTGGTGGAGTTGGAGATCATGCACACGGCCCTCTGGACCTTGGCGAGGTCGCCGCCTGGGACGACGCTGGGTGGCTGGTAGTTGATACCA
CACTTGAAACCAGTGGGGCACCAGTCCACAAACTGGATGGTGCGCTTCGTCTTGATGGTGGCCACAGCAGCGTTGACATCCTTGGGCACAACATCACCAC
GGTACATGAGGCAGCAGGCCATGTACTTGCCGTGGCGGGGGTCACACTTGGCCATCATGGAGGAAGGCTCGAAGGCGCTGTTGGTGATCTCAGCGACAGA
GAGCTGCTCATGGTAAGCCTTCTCAGCTGAGATCACTGGGGCATAGGAGGAAAGCATGAAGTGGATCCTCGGGTAGGGCACCAGGTTGGTCTGAAACTCG
TTCACATCAACATTCAGAGCACCATCAAACCTCAGGGAAGCAGTCAGGGATGAGATGAC