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Detailed information on CNT30558847


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 7e-116

BLAST vs NONCODE:
NONGMAT000219, E-value = 6e-56

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Panicum halliiOryza sativa31.1732.9592.17230forward
CNT30677979Panicum halliiSetaria viridis45.3935.394.03335forward
CNT30522101Panicum halliiSetaria italica43.930.5793.83324forward
CNT30640127Panicum halliiNymphaea colorata25.6123.6884.13189forward
CNT30533600Panicum halliiEucalyptus grandis37.9474.8792.14280forward
CNT30547577Panicum halliiIpomoea triloba42.0157.5188.39310forward
CNT30517711Panicum halliiJuglans regia14.9120.7590110forward
CNT30702815Panicum halliiQuercus lobata11.3822.8389.2984forward
CNT30371538Panicum halliiArabidopsis thaliana24.6638.3287.36182forward
CNT30501067Panicum halliiCoffea canephora42.1443.0284.89311forward
CNT30618173Panicum halliiSesamum indicum31.0328.8883.84229forward
CNT30729860Panicum halliiCorchorus capsularis44.9935.8986.14332forward
CNT3071007Panicum halliiQuercus suber38.4855.5885.21284forward
CNT30379228Panicum halliiManihot esculenta52.9844.8485.93391forward
CNT30507454Panicum halliiNicotiana attenuata48.154.785.07355forward
CNT30709081Panicum halliiGlycine max41.7340.9683.12308forward
CNT3098615Panicum halliiSolanum tuberosum32.9347.3786.42243forward
CNT30177039Panicum halliiSecale cereale52.0328.2891.93384forward
CNT30294619Panicum halliiTriticum aestivum45.5339.991.67336forward
CNT30224141Panicum halliiHordeum vulgare20.4622.2192.05151forward
CNT30391405Panicum halliiTriticum turgidum54.8853.3691.85405forward
CNT3085161Panicum halliiVigna radiata38.4840.5184.51284forward
CNT30555281Panicum halliiOryza glaberrima52.7146.9891.26389forward
CNT30144688Panicum halliiMedicago truncatula27.156.3487200forward
CNT30439881Panicum halliiAegilops tauschii54.0752.0291.48399forward
CNT30247794Panicum halliiAvena sativa51.955.9192.43383forward
CNT30662251Panicum halliiTriticum dicoccoides54.8859.7391.6405forward
CNT30265526Panicum halliiBrassica rapa31.7123.5687.18234forward
CNT30445643Panicum halliiSaccharum spontaneum55.1545.8990.91407forward
CNT30136973Panicum halliiLolium perenne30.8954.2991.67228forward
CNT30953Panicum halliiZea mays55.1543.0291.65407forward
CNT3041219Panicum halliiChlamydomonas reinhardtii24.6631.9392.86182forward
CNT30229012Panicum halliiAnanas comosus24.6621.9587.91182forward
CNT30219368Panicum halliiKalanchoe fedtschenkoi23.4429.6287.28173forward
CNT30208739Panicum halliiHelianthus annuus28.0552.4187.92207forward
CNT30684179Panicum halliiTriticum urartu36.5943.0692.59270forward
CNT30721351Panicum halliiTriticum spelta34.4238.3792.13254forward
CNT30340361Panicum halliiEragrostis tef30.3542.8392.41224forward
CNT30362155Panicum halliiSorghum bicolor44.0429.7991.08325forward
CNT30597072Panicum halliiOryza meridionalis39.5740.2290.75292forward
CNT30359250Panicum halliiLactuca sativa25.8828.0981.68191forward
CNT30371316Panicum halliiOryza glumipatula50.6831.6991.44374forward
CNT30570163Panicum halliiVitis vinifera47.4342.2782.86350forward
CNT3052700Panicum halliiAmborella trichopoda2149.0583.87155forward
CNT30106557Panicum halliiOryza longistaminata26.9692.9989.45199forward
CNT3024728Panicum halliiPopulus trichocarpa27.7825.2584.88205forward
CNT30119652Panicum halliiCitrus clementina28.3227.4381.82209forward
CNT30148523Panicum halliiBrachypodium distachyon32.7937.5289.67242forward
CNT30104256Panicum halliiOryza rufipogon52.7129.9291.52389forward
CNT30575645Panicum halliiOryza barthii37.1332.3190.88274forward
CNT30582828Panicum halliiEchinochloa crusgalli54.3446.7492.52401forward
CNT30117950Panicum halliiOryza nivara52.7146.9291.52389forward
CNT30593783Panicum halliiEragrostis curvula14.520.2793.46107forward
CNT30724701Panicum halliiLupinus angustifolius48.2431.5384.83356forward

Expression of CNT30558847

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MPHLNPVGHQSTNWMVRLVLMVATAAFTSLGTTSPRYMRQQAMYLPWRGSHLAIMEEGSKALLVISATDSCSW*

Sequence

>CNT30558847
GCAGGATTAAACCAAGTCTTACAACATAAGCTGTTGTAAACGACACACGGGGACAGATTGTTCAAACCGACACGCGCACACAACAGGATAAGCACGAGCC
ACTCGGGCAGATCATAGGATAACTGCGGCACACAGGCCTGACACAGCAGCAGGAAGCATCGTCGTCTAGTACTCATCACCCTCGTCGCCTTCCTCGCCCT
CGTCGAACTCAGCGCCGACCTCCTCGTAGTCCTTCTCGAGCGCAGCCAGGTCCTCACGAGCCTCAGAGAACTCACCCTCCTCCATGCCCTCACCCACGTA
CCAGTGCACGAAGGCACGCTTGGCGTACATGAGGTCACCGCCGGGCACCACGCTGGGTGGCTGGTAGTTGATGCCGCACTTGAATCCGGTGGGGCACCAG
TCCACGAACTGGATGGTGCGCTTGGTCTTGATGGTGGCCACAGCAGCGTTCACGTCCTTGGGCACCACATCACCACGGTACATGAGGCAGCAAGCCATGT
ACTTGCCGTGGCGCGGGTCACACTTGGCCATCATGGAGGAAGGCTCGAAGGCACTGTTGGTGATCTCAGCAACGGACAGCTGCTCGTGGTAAGCCTTCTC
AGCAGAGATGACTGGTGCATAGGATGAAAGCATAAAGTGGATCCTTGGGTAGGGCACCAGGTTGGTCTGGAACTCGTTCACATCCACGTTGAGAGCACCA
TCGAACCTCAGGGAGGCAGTCAGAGATGAGATGACCTG