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Detailed information on CNT30247895


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAF9|TBA4_GOSHI, E-value = 2e-99

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677979Avena sativaSetaria viridis56.2744.4792.18422forward
CNT30533600Avena sativaEucalyptus grandis43.286.6388.27324forward
CNT30501067Avena sativaCoffea canephora35.7337.0785.07268forward
CNT30729860Avena sativaCorchorus capsularis57.7346.8185.22433forward
CNT30184570Avena sativaSecale cereale57.4767.9891.65431forward
CNT30294619Avena sativaTriticum aestivum56.2750.1291.47422forward
CNT30391405Avena sativaTriticum turgidum57.4756.7991.42431forward
CNT30555384Avena sativaOryza glaberrima6254.3989.68465forward
CNT30144688Avena sativaMedicago truncatula26.6756.3484.5200forward
CNT30439881Avena sativaAegilops tauschii57.0755.892.06428forward
CNT30662251Avena sativaTriticum dicoccoides57.4763.5791.65431forward
CNT30362155Avena sativaSorghum bicolor59.4740.8890.13446forward
CNT30597072Avena sativaOryza meridionalis45.7347.2589.21343forward
CNT30356256Avena sativaLactuca sativa27.4739.7781.55206forward
CNT30371316Avena sativaOryza glumipatula55.073590.07413forward
CNT30570163Avena sativaVitis vinifera57.3351.9383.49430forward
CNT3052700Avena sativaAmborella trichopoda20.6749.0583.87155forward
CNT30119652Avena sativaCitrus clementina27.4727.0382.52206forward
CNT30148523Avena sativaBrachypodium distachyon32.2737.5292.56242forward
CNT30104256Avena sativaOryza rufipogon6235.7789.68465forward
CNT30117950Avena sativaOryza nivara57.4751.9989.56431forward
CNT30593783Avena sativaEragrostis curvula32.9346.7889.47247forward

Expression of CNT30247895

Peptides detected in this lncRNA

>peptide 1 (45 aa)
NSDATRKNTRQENFEARMTEHIKRDTCSTEVLMKQFNTDTESAQA*

>peptide 2 (34 aa)
MREKTSTTLVELEIMQTALCTLARSPPGTTVGGW*

>peptide 3 (73 aa)
MPHLKPVGHQSTNWMVRLVLMVATAAFTSLGTTSPRYMRQQAMYLPWRGSHLAIMDEGSKALLVISDTDSCSW*

Sequence

>CNT30247895
AAATTCTGATGCAACCAGAAAGAACACACGGCAGGAAAATTTTGAAGCAAGAATGACAGAACATATTAAGCGAGATACTTGTTCCACGGAAGTATTAATG
AAGCAGTTCAACACCGACACAGAAAGCGCTCAGGCTTAACAACTCGAGACCCAGACACAAGTTCCAAGAACAGGGACAGCACAGCAACACACTAAAAGAT
AGGCAGAGGAGTAGATTCATCCTCTGACGAGCAGATCAGTAGTCATCCTCATCCTCACCCTCCTCATCGTCACCGCCCTCAGCGCCGACCTCCTCGTAGT
CCTTCTCCAGGGCAGCAAGGTCAAACTTGTGGTCAATGCGGGAGAAGACCTCGACAACGCTGGTGGAGTTGGAGATCATGCAGACCGCCCTCTGCACCTT
GGCAAGGTCACCGCCAGGCACCACAGTGGGTGGCTGGTAGTTGATGCCGCACTTGAAGCCCGTGGGGCACCAGTCCACAAACTGGATGGTGCGCTTGGTC
TTGATGGTAGCCACAGCAGCGTTCACGTCCTTGGGCACCACATCACCACGGTACATGAGGCAGCAGGCCATGTACTTGCCGTGGCGGGGGTCACACTTGG
CCATCATGGATGAAGGCTCAAAGGCGCTGTTGGTGATCTCAGACACAGACAGCTGCTCGTGGTAGGCCTTCTCGGCAGAGATGACTGGCGCGTAGGAGGA
GAGCATGAAGTGGATCCTCGGGTACGGGACCAGGTTGGTCTGGAACTCAG