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Detailed information on CNT30104256


BLAST search results

BLAST vs Swiss-Prot:
sp|P20364|TBB1_DAUCA, E-value = 5e-27

BLAST vs NONCODE:
NONGMAT000219, E-value = 4e-49

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533600Oryza rufipogonEucalyptus grandis25.3888.2487.88330forward
CNT30501067Oryza rufipogonCoffea canephora23.6942.681.49308forward
CNT3071007Oryza rufipogonQuercus suber29.0873.9781.75378forward
CNT30507454Oryza rufipogonNicotiana attenuata26.8553.7881.66349forward
CNT30710214Oryza rufipogonGlycine max23.1599.0184.72301forward
CNT3098615Oryza rufipogonSolanum tuberosum18.2346.282.7237forward
CNT3085161Oryza rufipogonVigna radiata2240.882.17286forward
CNT30237104Oryza rufipogonBrassica oleracea23.3193.5283.5303forward
CNT30555384Oryza rufipogonOryza glaberrima62.7795.4497.3816forward
CNT30247895Oryza rufipogonAvena sativa35.776289.68465forward
CNT3075316Oryza rufipogonBrassica juncea14.9265.3286.08194forward
CNT30611949Oryza rufipogonArabis alpina9.1534.3988.24119forward
CNT30219368Oryza rufipogonKalanchoe fedtschenkoi17.6939.3884.78230forward
CNT30208739Oryza rufipogonHelianthus annuus15.6951.6585.78204forward
CNT30716312Oryza rufipogonMalus domestica golden14.2338.8786.49185forward
CNT30684179Oryza rufipogonTriticum urartu20.2341.9592.02263forward
CNT30721351Oryza rufipogonTriticum spelta19.5438.3792.13254forward
CNT30362155Oryza rufipogonSorghum bicolor3845.2888.26494forward
CNT30597072Oryza rufipogonOryza meridionalis26.3847.2598.83343forward
CNT30371352Oryza rufipogonOryza glumipatula45.6967.1996.3594forward
CNT30570163Oryza rufipogonVitis vinifera34.5454.2380.85449forward
CNT30106557Oryza rufipogonOryza longistaminata16.3899.5397.18213forward
CNT30147962Oryza rufipogonBrachypodium distachyon25.5497.9491.27332forward
CNT30578324Oryza rufipogonOryza barthii52.0868.9494.98677forward
CNT30117950Oryza rufipogonOryza nivara63.7710098.31829forward
CNT30593783Oryza rufipogonEragrostis curvula17.1542.2390.13223forward
CNT30558847Oryza rufipogonPanicum hallii29.9252.7191.52389forward

Expression of CNT30104256

Peptides detected in this lncRNA

>peptide 1 (75 aa)
KNDFNAIDTTLRSRGFVLRQTTNLDIKDATKKVHINNTGHSSESYKQTLHNRKANVFQNQTHKLIDRSPHGQIIG*

>peptide 2 (36 aa)
MSMRENTSTTLVELEIMHTALCTLARSPPGTTLGGW*

>peptide 3 (73 aa)
MPHLNPVGHQSTNWMVRFVLMVATAAFTSLGTTSPRYIRQHAMYLPWRGSHLAIMEDGSKALLVISATESCSW*

Sequence

>CNT30104256
AAAAAAACGATTTCAATGCTATAGACACAACTTTACGAAGTAGAGGCTTCGTTTTACGACAAACCACGAACTTGGATATTAAAGATGCCACAAAGAAGGT
TCACATAAACAACACAGGTCACAGCAGCGAAAGCTACAAGCAAACCCTGCATAATCGAAAAGCAAATGTTTTTCAAAACCAGACACACAAACTGATAGAT
AGAAGCCCACACGGACAGATCATAGGATAGCAGCAGTAATCAAGCATTGCCAAGGCACCAGGCAAGAACCCTGAACCTCTCTAGTACTCGTCACCCTCAT
CACCCTCGTCACCATCGTCGAACTCGGAGCCGACCTCCTCGTAGTCCTTCTCCAGCGCGGCGAGGTCGAACTTGATGTCGATGCGGGAGAACACCTCGAC
GACGCTGGTGGAGTTGGAGATCATGCACACGGCCCTCTGCACCTTGGCCAGGTCTCCCCCCGGGACGACGCTGGGCGGCTGGTAGTTGATGCCGCACTTG
AACCCCGTGGGGCACCAGTCCACGAACTGGATGGTGCGCTTCGTCTTGATGGTGGCCACCGCGGCGTTCACGTCCTTGGGGACCACGTCGCCGCGGTACA
TCAGGCAGCACGCCATGTACTTGCCGTGGCGCGGGTCGCACTTGGCCATCATGGAGGACGGCTCGAAGGCGCTGTTGGTGATCTCCGCCACGGAGAGCTG
CTCGTGGTAGGCCTTCTCGGCCGAGATCACCGGGGCGTAGGAGGAAAGCATGAAGTGGATCCTCGGGTAGGGCACCAGGTTGGTCTGGAACTCGTTGACA
TCCACATTCAGAGCACCATCGAACCTCAGGGAGGCAGTCAGTGAGGAGATGACCTGCAGCACATTAGCATTAGCCACATGATGTCAAGACAAATTGCACA
TTACATTGATCTTACAGCAAATAACTGGAGTACATAGCGCTGCAAGGAAAGATGCAGGGCAGTACCTGGGACACAAGCCTGTTGAGGTTGGTGTAGGTTG
GGCGCTCAATGTCGAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGTCGAGCAGGACAGCGACATCGGTGTGCTCAAGGAGGGAGTGGGTGGAGAC
CTGAGGGGACGGGTACACGGTGAACCCGAGCTTGGACTTCTTGCCATAGTCCACAGAGAGACGCTCAAGGAGAAGGGAACCGAGACCGGAGCCCGTTCCT
CCTCCAACAGCGTTGAACACAAGGAAGCCCTGGAGACCAGTGCAGTTGTCGGCAAGCTTCCTGATGCGGTCAAGGCACAGATCAACAATCTCCTTGCCAA