Detailed information on CNT30177336


BLAST search results

BLAST vs Swiss-Prot:
sp|Q96460|TBA2_HORVU, E-value = 0.0

BLAST vs NONCODE:
NONGMAT000220, E-value = 3e-62

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678108Secale cerealeSetaria viridis54.5468.8391.2625forward
CNT30522101Secale cerealeSetaria italica81.0687.6487.94929forward
CNT30640127Secale cerealeNymphaea colorata27.6639.7286.12317forward
CNT30547493Secale cerealeIpomoea triloba77.2379.1685.42885forward
CNT30501067Secale cerealeCoffea canephora56.4689.4984.39647forward
CNT30403515Secale cerealeBeta vulgaris20.1689.8887.01231forward
CNT30709081Secale cerealeGlycine max65.1899.3484.07747forward
CNT30294619Secale cerealeTriticum aestivum54.874.5894.75628forward
CNT3075316Secale cerealeBrassica juncea23.4790.5787.36269forward
CNT30606894Secale cerealeGossypium raimondii27.9287.6783.75320forward
CNT30716286Secale cerealeMalus domestica golden30.3726.6585.92348forward
CNT30721658Secale cerealeTriticum spelta17.8949.496.1205forward
CNT30362155Secale cerealeSorghum bicolor65.8869.287.02755forward
CNT30359250Secale cerealeLactuca sativa36.3961.3280.58417forward
CNT30147962Secale cerealeBrachypodium distachyon17.7159.8892.12203forward
CNT30575645Secale cerealeOryza barthii53.6672.5289.11615forward
CNT30117821Secale cerealeOryza nivara44.7646.2688.69513forward

Expression of CNT30177336

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MLGAQCQGSGGRCHRWPRCQEGWTHQCAQGGSGWTGHCCMAQQQRWRPGEMGTL*

>peptide 2 (32 aa)
MAGVTLGHHRGRLEGAVGDLSNGQLLVVSLLS*

>peptide 3 (53 aa)
MVATAALTSLGTTSPRYMRQQAMYLPWRGSHLAIIEEGSKALLVISATDSCSW*

>peptide 4 (48 aa)
MASLSRRMDTSVCSRREWVDRTLLYGSTTEVETWGDGYTVNPSLDFFP*

>peptide 5 (56 aa)
MPSPTYQWTKARLAYIRSNLWSMREKTSTTLVELEIMHTALWTLARSPPGTTPGGW*

Sequence

>CNT30177336
CAGTAGAGGCTATGGTGTAGATAACCAGATAACCAGATAGCATGCATATTAACCAAGGTGCATAACAGGTTCAAACGTACAAGGTTCATACAACACAACA
GGTTGTAAAACAAACACCTCAAAGCAAACGTTCAAACAGACAGATAACAGATAAAGCCACTCTGGGCAGATCATAGGATAGCAGTAGCACGCCTTGGAAA
AGCACCAGGAGGCAGGCTCTAGTACTCATCGCCCTCATCACCGTCCTCACCCTCGTCGAACTCAGCACCAACTTCTTCATAGTCCTTCTCCAGGGCAGCG
AGATCCTCACGGGCCTCAGAGAACTCTCCCTCCTCCATGCCCTCACCCACATACCAGTGGACGAAGGCGCGCTTGGCGTACATCAGGTCAAATTTGTGGT
CGATGCGGGAGAAGACCTCAACGACACTGGTGGAGTTGGAGATCATGCACACAGCCCTCTGGACCTTGGCAAGGTCGCCGCCTGGGACGACACCGGGTGG
CTGGTAGTTGATACCACACTTGAAGCCAGTGGGGCACCAGTCAACAAACTGGATAGTGCGCTTGGTCTTGATGGTGGCCACGGCAGCGTTGACATCCTTG
GGCACAACATCACCACGGTACATGAGACAGCAGGCCATGTACTTGCCATGGCGGGGGTCACACTTGGCCATCATAGAGGAAGGCTCGAAGGCGCTGTTGG
TGATCTCAGCAACGGACAGCTGCTCGTGGTAAGCCTTCTCAGCTGAGATAACTGGGGCATAGGAGGAAAGCATGAAGTGGATCCTTGGGTAGGGCACCAG
GTTGGTGTATGTTGGGCGCTCAATGTCAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCGTTGTCAAGAAGGATGGACACATCAGTGTGCTCAAGGAGG
GAGTGGGTGGACAGGACACTGTTGTATGGCTCAACAACAGAGGTGGAGACCTGGGGAGATGGGTACACTGTGAACCCAAGCTTGGACTTCTTTCCATAGT
CAACAGAGAGCCGCTCCAGGAGAAGCGAACCAAGGCCAGAGCCAGTTCCACCTCCAACAGCGTTGAAGACAAGGAATCCCTGGAGACCAGTGCAGTTGTC
TGAAAGCTTCCTGATGCGGTCAAGGCATAGATCAACAATCTCCTTG