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Detailed information on CNT3075316


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677947Brassica junceaSetaria viridis87.2138.9586.49259forward
CNT30522101Brassica junceaSetaria italica87.5424.5386.54260forward
CNT30517675Brassica junceaJuglans regia80.4739.5784.1239forward
CNT30501067Brassica junceaCoffea canephora87.5435.9681.54260forward
CNT30727923Brassica junceaCorchorus capsularis88.8922.388.64264forward
CNT30403515Brassica junceaBeta vulgaris77.4489.4985.22230forward
CNT30177336Brassica junceaSecale cereale90.5723.4787.36269forward
CNT30283673Brassica junceaTriticum aestivum46.1344.4886.86137forward
CNT30220716Brassica junceaHordeum vulgare45.4559.2185.93135forward
CNT30383371Brassica junceaTriticum turgidum46.1345.8286.86137forward
CNT30237104Brassica junceaBrassica oleracea64.6559.2692.19192forward
CNT30555279Brassica junceaOryza glaberrima87.8883.6585.82261forward
CNT30435344Brassica junceaAegilops tauschii46.1344.0586.86137forward
CNT3059767Brassica junceaArabidopsis lyrata54.2122.7189.44161forward
CNT30265526Brassica junceaBrassica rapa93.2727.996.75277forward
CNT30611949Brassica junceaArabis alpina36.0330.9288.79107forward
CNT30445136Brassica junceaSaccharum spontaneum87.8837.0783.91261forward
CNT30136247Brassica junceaLolium perenne46.1344.7786.13137forward
CNT3010240Brassica junceaZea mays87.2127.6183.78259forward
CNT30606894Brassica junceaGossypium raimondii84.1868.4986.4250forward
CNT30655223Brassica junceaRosa chinensis38.0544.4988.5113forward
CNT30210906Brassica junceaHelianthus annuus65.9975.180.61196forward
CNT30716286Brassica junceaMalus domestica golden87.5419.9186.15260forward
CNT30683531Brassica junceaTriticum urartu46.1344.6387.59137forward
CNT30721658Brassica junceaTriticum spelta65.3246.7586.6194forward
CNT30619808Brassica junceaCajanus cajan56.2328.0785.03167forward
CNT30597159Brassica junceaOryza meridionalis65.3226.887.11194forward
CNT30704384Brassica junceaPrunus avium29.9715.9884.2789forward
CNT30106559Brassica junceaOryza longistaminata26.9435.7186.2580forward
CNT3024647Brassica junceaPopulus trichocarpa84.5148.4685.26251forward
CNT30147962Brassica junceaBrachypodium distachyon65.3257.2386.6194forward
CNT30104256Brassica junceaOryza rufipogon65.3214.9286.08194forward
CNT30575645Brassica junceaOryza barthii87.5430.6687.69260forward
CNT30117847Brassica junceaOryza nivara65.3220.786.08194forward
CNT30726236Brassica junceaLupinus angustifolius86.8731.8185.66258forward

Expression of CNT3075316

Peptides detected in this lncRNA

>peptide 1 (59 aa)
LRDETVEEDRDISVFQEGVSGEDTVVRLNNRGRDLWRWVNSEPELGLFPIVDREPLEEK*

Sequence

>CNT3075316
ACCTGAGAGACGAGACGGTTGAGGAGGATAGAGACATCAGTGTGTTCCAAGAGGGAGTGAGTGGAGAGGACACTGTTGTAAGGCTCAACAACAGAGGTAG
AGACCTGTGGAGATGGGTAAACAGTGAACCCGAGCTTGGACTTTTTCCCATAGTCGACAGAGAGCCTCTCGAGGAGAAGTGATCCAAGACCAGATCCAGT
ACCTCCTCCAACAGCGTTGAAGACAAGGAACCCTTGGAGACCAGTACAGTTATCAGCAAGCTTCCTGATACGGTCCAAGCACAGATCAACAATTTCC