« Back to Gossypium raimondii search


Detailed information on CNT30606894


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAG0|TBA2_GOSHI, E-value = 3e-65

BLAST vs NONCODE:
NONGMAT000220, E-value = 4e-77

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Gossypium raimondiiOryza sativa72.8853.5282.33266forward
CNT30678405Gossypium raimondiiSetaria viridis91.7847.9985.97335forward
CNT30522101Gossypium raimondiiSetaria italica93.1532.0885.88340forward
CNT30640127Gossypium raimondiiNymphaea colorata90.4141.3583.94330forward
CNT30547493Gossypium raimondiiIpomoea triloba79.4525.9484.14290forward
CNT30517675Gossypium raimondiiJuglans regia68.4941.3988.4250forward
CNT30501067Gossypium raimondiiCoffea canephora96.7148.8284.14353forward
CNT30727923Gossypium raimondiiCorchorus capsularis89.3227.5393.56326forward
CNT3071006Gossypium raimondiiQuercus suber83.2962.9485.86304forward
CNT30379324Gossypium raimondiiManihot esculenta59.4522.4692.17217forward
CNT30403515Gossypium raimondiiBeta vulgaris66.5894.5586.42243forward
CNT30712809Gossypium raimondiiGlycine max90.9699.183.73332forward
CNT30177336Gossypium raimondiiSecale cereale87.6727.9283.75320forward
CNT30296175Gossypium raimondiiTriticum aestivum55.8969.8685.29204forward
CNT30220716Gossypium raimondiiHordeum vulgare26.8542.9885.7198forward
CNT30391993Gossypium raimondiiTriticum turgidum55.8985.7185.29204forward
CNT30237104Gossypium raimondiiBrassica oleracea29.8633.6488.99109forward
CNT30555279Gossypium raimondiiOryza glaberrima75.8988.7882.31277forward
CNT30435344Gossypium raimondiiAegilops tauschii38.3645.0285.71140forward
CNT3059767Gossypium raimondiiArabidopsis lyrata40.8221.0286.58149forward
CNT3075316Gossypium raimondiiBrassica juncea68.4984.1886.4250forward
CNT30265526Gossypium raimondiiBrassica rapa8029.4182.88292forward
CNT30445136Gossypium raimondiiSaccharum spontaneum95.8949.7283.14350forward
CNT30136247Gossypium raimondiiLolium perenne38.3645.7588.57140forward
CNT3010240Gossypium raimondiiZea mays87.6734.1284.69320forward
CNT3041219Gossypium raimondiiChlamydomonas reinhardtii55.6235.6179.8203forward
CNT30210906Gossypium raimondiiHelianthus annuus28.4939.8582.69104forward
CNT30716299Gossypium raimondiiMalus domestica golden99.1859.6485.91362forward
CNT30683531Gossypium raimondiiTriticum urartu38.3645.687.14140forward
CNT30721658Gossypium raimondiiTriticum spelta56.9950.1283.17208forward
CNT30362155Gossypium raimondiiSorghum bicolor87.6729.3385.62320forward
CNT30619808Gossypium raimondiiCajanus cajan32.3319.8388.14118forward
CNT30597159Gossypium raimondiiOryza meridionalis56.9928.7383.17208forward
CNT30359250Gossypium raimondiiLactuca sativa35.8919.2682.44131forward
CNT30371316Gossypium raimondiiOryza glumipatula87.6727.1283.12320forward
CNT3052700Gossypium raimondiiAmborella trichopoda40.8247.1583.22149forward
CNT30106559Gossypium raimondiiOryza longistaminata13.4221.8889.849forward
CNT3024647Gossypium raimondiiPopulus trichocarpa89.8663.3289.94328forward
CNT30147962Gossypium raimondiiBrachypodium distachyon49.0452.882.68179forward
CNT30104015Gossypium raimondiiOryza rufipogon47.414.3284.39173forward
CNT30575645Gossypium raimondiiOryza barthii91.5139.3985.63334forward
CNT30117847Gossypium raimondiiOryza nivara56.9922.281.73208forward
CNT30174517Gossypium raimondiiVigna angularis36.7166.6783.58134forward
CNT30726375Gossypium raimondiiLupinus angustifolius98.3697.2986.91359forward
CNT3065151Gossypium raimondiiSelaginella moellendorffii12.8822.8291.4947forward
CNT3040082Gossypium raimondiiMarchantia polymorpha72.8863.3383.08266forward

Expression of CNT30606894

Peptides detected in this lncRNA

>peptide 1 (41 aa)
DKTVKIGVSGSLNVKRAPANVIDSLIVKKNSHISVLQKGVR*

Sequence

>CNT30606894
GACAAGACGGTTAAGATTGGTGTAAGTGGGTCGCTCAATGTCAAGAGAGCGCCTGCAAATGTCATAGATAGCCTCATTGTCAAGAAGAACAGCCACATCA
GTGTGCTCCAAAAGGGAGTGCGTTGAGAGGACACTGTTGTAGGGCTCAACAACAGATGTGGAGACCTGGGGTGATGGGTAGACAGTGAAACCCAACTTGG
ATTTCTTGCCATAATCAACAGACAAACGCTCCAAAAGGAGGGAACCAAGACCAGATCCAGTGCCTCCACCAACAGCGTTGAAAACAAGGAAACCTTGAAG
ACCGGTACAGTTATCAGCAAGCTTCCTGATACGGTCCAAGCACAAGTCAACGATCTCTTTGCCAA