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Detailed information on CNT30371538


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0WV25|TBA4_ARATH, E-value = 3e-104

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Arabidopsis thalianaOryza sativa39.5826.9383.51188forward
CNT30677760Arabidopsis thalianaSetaria viridis87.5845.8782.69416forward
CNT30522101Arabidopsis thalianaSetaria italica87.5839.2582.45416forward
CNT30640127Arabidopsis thalianaNymphaea colorata56.6333.7188.1269forward
CNT30533600Arabidopsis thalianaEucalyptus grandis51.3765.2483.61244forward
CNT30547493Arabidopsis thalianaIpomoea triloba91.1638.7384.53433forward
CNT30517711Arabidopsis thalianaJuglans regia45.2640.5786.51215forward
CNT30702815Arabidopsis thalianaQuercus lobata33.2642.9388.61158forward
CNT30501067Arabidopsis thalianaCoffea canephora43.7928.7785.58208forward
CNT30618173Arabidopsis thalianaSesamum indicum58.3234.9385.2277forward
CNT3021397Arabidopsis thalianaCitrullus lanatus21.2615.2682.18101forward
CNT30727923Arabidopsis thalianaCorchorus capsularis86.9534.8888.14413forward
CNT3071007Arabidopsis thalianaQuercus suber57.2653.2386.76272forward
CNT30379228Arabidopsis thalianaManihot esculenta91.3749.7787.56434forward
CNT30504799Arabidopsis thalianaNicotiana attenuata50.1160.8787.39238forward
CNT30712730Arabidopsis thalianaGlycine max76.2170.787.57362forward
CNT3098615Arabidopsis thalianaSolanum tuberosum44.6341.3387.26212forward
CNT30177039Arabidopsis thalianaSecale cereale86.9530.4185.71413forward
CNT30284381Arabidopsis thalianaTriticum aestivum86.9554.0687.17413forward
CNT30224141Arabidopsis thalianaHordeum vulgare70.5349.2680.9335forward
CNT30391523Arabidopsis thalianaTriticum turgidum85.0554.8284.65404forward
CNT3086234Arabidopsis thalianaVigna radiata62.9556.4284.28299forward
CNT30555352Arabidopsis thalianaOryza glaberrima86.3245.3579.51410forward
CNT30144939Arabidopsis thalianaMedicago truncatula45.8944.7686.24218forward
CNT30439881Arabidopsis thalianaAegilops tauschii66.1140.9486.31314forward
CNT30247087Arabidopsis thalianaAvena sativa86.1155.8786.06409forward
CNT30655883Arabidopsis thalianaTriticum dicoccoides86.9557.8487.17413forward
CNT3059767Arabidopsis thalianaArabidopsis lyrata50.3233.7197.07239forward
CNT3075301Arabidopsis thalianaBrassica juncea38.9534.8491.35185forward
CNT30265526Arabidopsis thalianaBrassica rapa91.3743.7191.71434forward
CNT30445643Arabidopsis thalianaSaccharum spontaneum90.1148.2583.64428forward
CNT30136973Arabidopsis thalianaLolium perenne50.1156.6787.82238forward
CNT30953Arabidopsis thalianaZea mays80.6340.4983.03383forward
CNT3041219Arabidopsis thalianaChlamydomonas reinhardtii3226.6783.55152forward
CNT30229012Arabidopsis thalianaAnanas comosus49.2628.2384.62234forward
CNT30219368Arabidopsis thalianaKalanchoe fedtschenkoi48.2139.2184.72229forward
CNT30208739Arabidopsis thalianaHelianthus annuus41.8950.3889.45199forward
CNT30624589Arabidopsis thalianaDaucus carota21.8920.9786.54104forward
CNT30689745Arabidopsis thalianaTriticum urartu86.9554.287.41413forward
CNT30720142Arabidopsis thalianaTriticum spelta33.6844.6987.5160forward
CNT30340361Arabidopsis thalianaEragrostis tef21.8919.8983.65104forward
CNT30361562Arabidopsis thalianaSorghum bicolor91.1643.7882.45433forward
CNT30597072Arabidopsis thalianaOryza meridionalis37.6824.6684.36179forward
CNT30371350Arabidopsis thalianaOryza glumipatula80.6346.7179.37383forward
CNT30481833Arabidopsis thalianaChara braunii26.9543.3982.03128forward
CNT30430260Arabidopsis thalianaPapaver somniferum4435.9188.52209forward
CNT30570163Arabidopsis thalianaVitis vinifera66.3238.0487.3315forward
CNT3024728Arabidopsis thalianaPopulus trichocarpa56.8433.2586.3270forward
CNT30119652Arabidopsis thalianaCitrus clementina27.1616.9382.17129forward
CNT30148523Arabidopsis thalianaBrachypodium distachyon26.7419.6983.46127forward
CNT30103952Arabidopsis thalianaOryza rufipogon86.3244.1379.51410forward
CNT30578286Arabidopsis thalianaOryza barthii57.2628.3380.88272forward
CNT30582828Arabidopsis thalianaEchinochloa crusgalli91.1650.4783.37433forward
CNT30117950Arabidopsis thalianaOryza nivara57.2632.8180.88272forward
CNT30593783Arabidopsis thalianaEragrostis curvula39.1635.2380.11186forward
CNT30558847Arabidopsis thalianaPanicum hallii38.3224.6687.36182forward
CNT30724701Arabidopsis thalianaLupinus angustifolius86.9536.5889.1413forward

Expression of CNT30371538

Peptides detected in this lncRNA

>peptide 1 (40 aa)
QHRPLHNPSPMLQDPHVPLRILLLPYPHPHTSERKHVWRT*

Sequence

>CNT30371538
TTCAGCACCGACCTCTTCATAATCCTTCTCCAATGCTGCAAGATCCTCACGTGCCTCTGAGAATTCTCCTTCTTCCATACCCTCACCCACATACCAGTGA
ACGAAAGCACGTTTGGCGTACATAAGATCAAACTTGTGATCAATACGGGAGAACACCTCAGCAACACTGGTCGAGTTTGAGATCATGCAAACAGCTCTCT
GGACTTTAGCAAGATCACCTCCTGGAACAACTGTTGGTGGCTGGTAGTTGATACCACACTTGAATCCAGTAGGACACCAGTCAACAAACTGAATAGTGCG
CTTGGTCTTGATGGTGCCAACAGCTGCGTTTACATCCTTGGGGACAACATCACCACGGTACATCAAACAGCAAGCCATGTACTTTCCGTGACGTGGGTCA
CACTTAGCCATCATGGAAGCTGGCTCAAAAGCACCATCAAACCTCAGAGAAGCAGTCAAGGAAGAAATAACCTGA