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Detailed information on CNT30729860


BLAST search results

BLAST vs Swiss-Prot:
sp|P33629|TBA_PRUDU, E-value = 4e-120

BLAST vs NONCODE:
NONGMAT000219, E-value = 5e-57

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533600Corchorus capsularisEucalyptus grandis35.2487.1787.12326forward
CNT30317272Corchorus capsularisCorylus avellana18.744.4787.28173forward
CNT30547493Corchorus capsularisIpomoea triloba51.5742.6787477forward
CNT30501067Corchorus capsularisCoffea canephora32.9742.1986.23305forward
CNT3071007Corchorus capsularisQuercus suber40.1172.688.14371forward
CNT30507454Corchorus capsularisNicotiana attenuata39.3556.0987.91364forward
CNT30709049Corchorus capsularisGlycine max54.8173.1682.64507forward
CNT3098615Corchorus capsularisSolanum tuberosum29.1952.6386.67270forward
CNT30177039Corchorus capsularisSecale cereale54.3837.0486.48503forward
CNT30294619Corchorus capsularisTriticum aestivum47.8952.6185.78443forward
CNT30391405Corchorus capsularisTriticum turgidum50.8161.9285.53470forward
CNT3085161Corchorus capsularisVigna radiata34.2745.2286.44317forward
CNT30555281Corchorus capsularisOryza glaberrima4449.1582.56407forward
CNT30144688Corchorus capsularisMedicago truncatula18.748.7391.33173forward
CNT30439881Corchorus capsularisAegilops tauschii50.8161.2886.17470forward
CNT30247895Corchorus capsularisAvena sativa46.8157.7385.22433forward
CNT30611949Corchorus capsularisArabis alpina26.1669.9483.88242forward
CNT30445643Corchorus capsularisSaccharum spontaneum54.0556.3785.8500forward
CNT30953Corchorus capsularisZea mays54.0552.8584.8500forward
CNT30609153Corchorus capsularisGossypium raimondii32.6574.5792.05302forward
CNT30219368Corchorus capsularisKalanchoe fedtschenkoi24.2238.3687.5224forward
CNT30648424Corchorus capsularisRosa chinensis18.0552.0285.63167forward
CNT30129276Corchorus capsularisCorymbia citriodora19.3542.8289.39179forward
CNT30716299Corchorus capsularisMalus domestica golden44.8668.3786.02415forward
CNT30721351Corchorus capsularisTriticum spelta22.5931.5786.12209forward
CNT30359416Corchorus capsularisLactuca sativa20.6526.7184.82191forward
CNT30570163Corchorus capsularisVitis vinifera48.1153.7488.09445forward
CNT3052700Corchorus capsularisAmborella trichopoda14.8143.3586.13137forward
CNT30148523Corchorus capsularisBrachypodium distachyon26.1637.5283.47242forward
CNT30104125Corchorus capsularisOryza rufipogon54.3838.0881.71503forward
CNT30582828Corchorus capsularisEchinochloa crusgalli54.3858.6285.09503forward
CNT30117950Corchorus capsularisOryza nivara50.1655.9781.68464forward
CNT30558847Corchorus capsularisPanicum hallii35.8944.9986.14332forward

Expression of CNT30729860

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MVATAAFTSLGTTSPLYMRQHAMYFPWRGSHFAIMEEGSKALLVISATDSCSW*

>peptide 2 (41 aa)
MRSNLWSMREKTSATLVELEIMQTALCTLARSPPGTTVGGW*

>peptide 3 (62 aa)
MATSEIVGSIFFATDELLRVEELAVSSGPHFIDNRRLQIYKNSAWDVLPGTSFTEKGVKSIVS

>peptide 4 (34 aa)
FLHTLTNIPVNKGTLAVHEVKFVVNARKDFSNTG*

Sequence

>CNT30729860
CCTTCCTCCATACCCTCACCAACATACCAGTGAACAAAGGCACGCTTGCAGTACATGAGGTCAAATTTGTGGTCAATGCGAGAAAAGACTTCAGCAACAC
TGGTTGAGTTGGAGATCATGCAGACAGCCCTCTGCACCTTGGCAAGATCACCTCCTGGAACAACAGTTGGTGGCTGGTAGTTGATACCACATTTGAATCC
AGTAGGGCACCAATCAACAAATTGGATTGTGCGCTTCGTCTTGATGGTGGCCACAGCTGCATTCACATCCTTGGGCACAACATCACCCCTATACATGAGG
CAGCATGCCATGTACTTCCCATGGCGTGGGTCACATTTTGCCATCATGGAAGAGGGTTCAAAAGCACTGTTGGTGATCTCAGCCACTGATAGCTGCTCAT
GGTAAGCCTTCTCAGCTGAAATAACAGGAGCATATGATGAAAGCATGAAATGGATCCTGGGGTAAGGAACCAGGTTGGTCTGGAACTCAGTCACATCCAC
ATTCAGGGCTCCACAACAGATGTAGACACCTGAGGTGATGGATACACAGTGAACCCAAGCTTGGACTTCTTTCCATAATCAACAGAGAGACGCTCCAAGA
GGAGGGATCCAAGACCAGACCCGGTACCACCACCGACGGCATTGAAGACCAAGAAACCTTGGAGTCCGGTACAGTTATCAGCAAGCTTTCTGATACGATC
CAAGCAGAGATCAACAATCTCTTTCCCAATAGTGTAATGGCCACGAGCGAAATTGTTGGCAGCATCTTCTTTGCCACTGATGAGTTGCTCAGGGTGGAAG
AGCTGGCGGTAAGTTCCGGTCCTCACTTCATCGATAACCGTCGGCTCCAGATCTACAAAAACAGCGCGTGGGACGTGCTTCCCGGCACCAGTTTCACTGA
AAAAGGTGTTAAAAGCATCGTCTCC