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Detailed information on CNT30597072


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 5e-78

BLAST vs NONCODE:
NONGMAT000220, E-value = 2e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Oryza meridionalisOryza sativa36.0937.5493.13262forward
CNT30677979Oryza meridionalisSetaria viridis47.2536.1489.5343forward
CNT30522101Oryza meridionalisSetaria italica47.2532.3689.21343forward
CNT30533600Oryza meridionalisEucalyptus grandis45.4588.2487.58330forward
CNT30547493Oryza meridionalisIpomoea triloba46.5630.2384.32338forward
CNT30371538Oryza meridionalisArabidopsis thaliana24.6637.6884.36179forward
CNT30501067Oryza meridionalisCoffea canephora33.3333.4782.23242forward
CNT30618173Oryza meridionalisSesamum indicum33.7530.981.22245forward
CNT3071007Oryza meridionalisQuercus suber47.2567.1282.22343forward
CNT30379228Oryza meridionalisManihot esculenta46.9739.1182.4341forward
CNT30507454Oryza meridionalisNicotiana attenuata37.4741.9182.35272forward
CNT30712730Oryza meridionalisGlycine max40.2257.0382.88292forward
CNT3098615Oryza meridionalisSolanum tuberosum32.6446.283.12237forward
CNT30184570Oryza meridionalisSecale cereale47.2554.190.67343forward
CNT30294619Oryza meridionalisTriticum aestivum47.2540.7490.38343forward
CNT30391405Oryza meridionalisTriticum turgidum47.2545.1990.38343forward
CNT3085161Oryza meridionalisVigna radiata38.5739.9482.14280forward
CNT30555517Oryza meridionalisOryza glaberrima71.3564.7598.26518forward
CNT30144688Oryza meridionalisMedicago truncatula22.8746.7682.53166forward
CNT30439881Oryza meridionalisAegilops tauschii47.2544.7289.5343forward
CNT30247895Oryza meridionalisAvena sativa47.2545.7389.21343forward
CNT30662251Oryza meridionalisTriticum dicoccoides47.2550.5990.67343forward
CNT30446538Oryza meridionalisSaccharum spontaneum47.2543.9789.21343forward
CNT30136973Oryza meridionalisLolium perenne33.4757.8687.65243forward
CNT30953Oryza meridionalisZea mays47.2536.2687.76343forward
CNT3041219Oryza meridionalisChlamydomonas reinhardtii29.6137.7291.16215forward
CNT30219368Oryza meridionalisKalanchoe fedtschenkoi31.6839.3884.35230forward
CNT30208739Oryza meridionalisHelianthus annuus28.151.6585.29204forward
CNT30689745Oryza meridionalisTriticum urartu35.9534.2586.21261forward
CNT30361562Oryza meridionalisSorghum bicolor73.5553.9985.96534forward
CNT30371316Oryza meridionalisOryza glumipatula47.2529.0798.54343forward
CNT30570163Oryza meridionalisVitis vinifera46.9741.1880.94341forward
CNT30148523Oryza meridionalisBrachypodium distachyon30.5834.4291.89222forward
CNT30104256Oryza meridionalisOryza rufipogon47.2526.3898.83343forward
CNT30578286Oryza meridionalisOryza barthii40.0830.3198.63291forward
CNT30582828Oryza meridionalisEchinochloa crusgalli47.2539.9888.34343forward
CNT30117950Oryza meridionalisOryza nivara47.2541.3898.83343forward
CNT30558847Oryza meridionalisPanicum hallii40.2239.5790.75292forward
CNT30726291Oryza meridionalisLupinus angustifolius46.8343.3781.76340forward

Expression of CNT30597072

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MPHLNPVGHQSTNWIVRFVLMVATAAFTSLGTTSPRYIRQHAMYLPWRGSHLAIMEDGSKALLVISATESCSW*

Sequence

>CNT30597072
CAAACTGATAGATAGAAGCCCACACGGGCAGATCATAGGATAGCAGCAGTAATCAGGCACATTGCCAAGGCAGCAGGAACCCTGAACCACCCTCTAGTAC
TCGTCACCCTCATCACCCTCGTCACCGTCATCGAACTCGGAGCCGACCTCCTCGTAGTCCTTCTCCAGCGCGGCGAGATCATGCACACGGCCCTCTGCAC
CTTGGCCAGGTCGCCCCCCGGGACGACGCTGGGCGGCTGGTAGTTGATGCCGCACTTGAACCCCGTGGGGCACCAGTCCACGAACTGGATTGTGCGCTTC
GTCTTGATGGTGGCCACTGCGGCGTTCACGTCCTTGGGGACCACGTCGCCGCGGTACATCAGGCAGCACGCCATGTACTTGCCGTGGCGCGGGTCACACT
TGGCCATCATGGAGGACGGCTCGAAGGCGCTGTTGGTGATCTCCGCCACGGAGAGCTGCTCGTGGTAGGCCTTCTCGGCCGAGATCACCGGGGCGTAGGA
GGAAAGCATGAAGTGGAGACCTGAGGGGACGGGTACACGGTGAACCCAAGCTTGGACTTCTTGCCATAGTCCACAGAGAGACGCTCAAGGAGAAGGGAAC
CGAGACCAGAGCCCGTTCCTCCTCCAACAGCGTTGAACACAAGGAAGCCTTGGAGACCAGTGCAGTTGTCAGCAAGCTTCCTGATGCGGTCAAGGCACAG
ATCAACAATCTCCTTGCCAACTGGAA