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Detailed information on CNT30208739


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAF9|TBA4_GOSHI, E-value = 4e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Helianthus annuusOryza sativa81.5246.1381.68322forward
CNT30677979Helianthus annuusSetaria viridis51.6521.587.25204forward
CNT30522101Helianthus annuusSetaria italica51.6519.2586.76204forward
CNT30533600Helianthus annuusEucalyptus grandis51.6554.5586.27204forward
CNT30547493Helianthus annuusIpomoea triloba53.9219.0587.32213forward
CNT30371538Helianthus annuusArabidopsis thaliana50.3841.8989.45199forward
CNT30501067Helianthus annuusCoffea canephora53.6729.3287.26212forward
CNT30618173Helianthus annuusSesamum indicum54.1826.9985.98214forward
CNT30727924Helianthus annuusCorchorus capsularis53.9222.2888.73213forward
CNT3071007Helianthus annuusQuercus suber53.6741.4984.91212forward
CNT30504799Helianthus annuusNicotiana attenuata53.4253.9686.26211forward
CNT30712730Helianthus annuusGlycine max52.1540.2389.81206forward
CNT3098615Helianthus annuusSolanum tuberosum53.6741.3386.32212forward
CNT30177039Helianthus annuusSecale cereale52.4115.2488.41207forward
CNT30283587Helianthus annuusTriticum aestivum51.928.6388.78205forward
CNT30391559Helianthus annuusTriticum turgidum78.9949.0683.97312forward
CNT3085161Helianthus annuusVigna radiata49.8728.186.29197forward
CNT30555281Helianthus annuusOryza glaberrima51.6524.6485.78204forward
CNT30144688Helianthus annuusMedicago truncatula25.0627.8987.8899forward
CNT30439881Helianthus annuusAegilops tauschii52.4126.9987.92207forward
CNT30249355Helianthus annuusAvena sativa54.6828.7287.04216forward
CNT30655883Helianthus annuusTriticum dicoccoides52.4128.9987.92207forward
CNT3075301Helianthus annuusBrassica juncea22.2816.5794.3288forward
CNT30265526Helianthus annuusBrassica rapa52.9121.0589.95209forward
CNT30445643Helianthus annuusSaccharum spontaneum51.652386.27204forward
CNT30136973Helianthus annuusLolium perenne78.9974.2985.9312forward
CNT30953Helianthus annuusZea mays51.6521.5686.76204forward
CNT3041219Helianthus annuusChlamydomonas reinhardtii38.4826.6784.87152forward
CNT30689745Helianthus annuusTriticum urartu78.9940.9485.58312forward
CNT30361562Helianthus annuusSorghum bicolor54.6821.8485.65216forward
CNT30597072Helianthus annuusOryza meridionalis51.6528.185.29204forward
CNT30371316Helianthus annuusOryza glumipatula51.6517.2985.78204forward
CNT30570163Helianthus annuusVitis vinifera46.0821.9887.91182forward
CNT3024735Helianthus annuusPopulus trichocarpa30.3822.2288.33120forward
CNT30119652Helianthus annuusCitrus clementina33.1617.1984.73131forward
CNT30148523Helianthus annuusBrachypodium distachyon35.9522.0283.8142forward
CNT30104256Helianthus annuusOryza rufipogon51.6515.6985.78204forward
CNT30578286Helianthus annuusOryza barthii51.6521.2585.78204forward
CNT30582828Helianthus annuusEchinochloa crusgalli51.6523.7888.24204forward
CNT30117950Helianthus annuusOryza nivara51.6524.6185.78204forward
CNT30558847Helianthus annuusPanicum hallii52.4128.0587.92207forward

Expression of CNT30208739

Peptides detected in this lncRNA

>peptide 1 (82 aa)
HSRWLVVNTALETSRTPVNKLDGPLGLDGCNRSIHILGDNITTVHQTASHVLAVTRVTLCHHRGRLKSTVGAYEESIKWILG*

>peptide 2 (32 aa)
MVLLVLMVATAAFTSLGTTSPRYIRQQAMYLP*

Sequence

>CNT30208739
ACCACAGTCGGTGGCTGGTAGTTAATACCGCACTTGAAACCAGTAGGACACCAGTCAACAAACTGGATGGTCCTCTTGGTCTTGATGGTTGCAACCGCAG
CATTCACATCCTTGGGGACAACATCACCACGGTACATCAGACAGCAAGCCATGTACTTGCCGTGACGCGGGTCACACTTTGCCATCATAGAGGACGGCTC
AAAAGCACTGTTGGTGCGTATGAGGAAAGCATAAAGTGGATCCTCGGGTAGGGGACCAAGTTGGTTTGGAATTCAGTCACATCAACATTCAAAGCACCGT
CAAACCTCAAAGATGCGGTCAAGGAAGAAATAACTTGAGAGACCAGGCGGTTAAGGTTGGTGTAGGTGGGTCGCTCGATGTCAAGAGATCGCCTG