« Back to Marchantia polymorpha search


Detailed information on CNT3040082


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAG0|TBA2_GOSHI, E-value = 9e-72

BLAST vs NONCODE:
NONGMAT000220, E-value = 4e-31

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Marchantia polymorphaOryza sativa35.9530.3880.13151forward
CNT30677509Marchantia polymorphaSetaria viridis53.3326.4284.38224forward
CNT30522212Marchantia polymorphaSetaria italica53.3392.1884.38224forward
CNT30640127Marchantia polymorphaNymphaea colorata75.7139.8582.39318forward
CNT30517675Marchantia polymorphaJuglans regia24.7617.2283.65104forward
CNT30501067Marchantia polymorphaCoffea canephora60.9535.4182.81256forward
CNT30727923Marchantia polymorphaCorchorus capsularis66.1923.4880.94278forward
CNT3071006Marchantia polymorphaQuercus suber66.1957.5679.86278forward
CNT30403515Marchantia polymorphaBeta vulgaris39.7664.9879.64167forward
CNT30709081Marchantia polymorphaGlycine max67.6237.7781.34284forward
CNT30296175Marchantia polymorphaTriticum aestivum53.3376.7183.93224forward
CNT30220716Marchantia polymorphaHordeum vulgare14.7627.1987.162forward
CNT30391993Marchantia polymorphaTriticum turgidum52.6292.8683.71221forward
CNT30237104Marchantia polymorphaBrassica oleracea25.4833.0284.11107forward
CNT30555279Marchantia polymorphaOryza glaberrima48.3365.0681.28203forward
CNT30435344Marchantia polymorphaAegilops tauschii39.0552.7383.54164forward
CNT3059767Marchantia polymorphaArabidopsis lyrata31.918.982.84134forward
CNT3075301Marchantia polymorphaBrassica juncea67.3853.381.27283forward
CNT30445136Marchantia polymorphaSaccharum spontaneum59.7635.6580.88251forward
CNT30136247Marchantia polymorphaLolium perenne38.8153.2784.05163forward
CNT3010240Marchantia polymorphaZea mays62.6228.0482.89263forward
CNT3041219Marchantia polymorphaChlamydomonas reinhardtii49.2936.3280.19207forward
CNT30606894Marchantia polymorphaGossypium raimondii63.3372.8883.08266forward
CNT30229091Marchantia polymorphaAnanas comosus19.2922.6383.9581forward
CNT30655223Marchantia polymorphaRosa chinensis41.969.2982.95176forward
CNT30210906Marchantia polymorphaHelianthus annuus20.4832.9583.7286forward
CNT30716299Marchantia polymorphaMalus domestica golden72.1449.9281.52303forward
CNT30683531Marchantia polymorphaTriticum urartu39.0553.4283.54164forward
CNT30721349Marchantia polymorphaTriticum spelta36.1950.6783.55152forward
CNT30619808Marchantia polymorphaCajanus cajan24.7617.4882.69104forward
CNT30596030Marchantia polymorphaOryza meridionalis38.5767.586.42162forward
CNT30360524Marchantia polymorphaLactuca sativa67.6244.3179.23284forward
CNT30371316Marchantia polymorphaOryza glumipatula71.1925.3482.61299forward
CNT3052700Marchantia polymorphaAmborella trichopoda29.0538.6183.61122forward
CNT30106559Marchantia polymorphaOryza longistaminata14.7627.6887.162forward
CNT3024647Marchantia polymorphaPopulus trichocarpa73.5759.6580.26309forward
CNT30331462Marchantia polymorphaDioscorea rotundata44.0535.9979.46185forward
CNT30148523Marchantia polymorphaBrachypodium distachyon59.7638.9180.48251forward
CNT30100745Marchantia polymorphaOryza rufipogon36.6713.3787.01154forward
CNT30575645Marchantia polymorphaOryza barthii65.2432.3183.21274forward
CNT30117881Marchantia polymorphaOryza nivara32.1415.6184.44135forward
CNT30726253Marchantia polymorphaLupinus angustifolius67.6278.0281.69284forward
CNT3065151Marchantia polymorphaSelaginella moellendorffii16.1933.0185.2968forward

Expression of CNT3040082

Peptides detected in this lncRNA

>peptide 1 (47 aa)
GVRHQVGLKFSNVDIKGPVEAKGRCQGGNNLRYKPVQVCVGRALNVE*

Sequence

>CNT3040082
CGGGGGTACGGCACCAAGTTGGTCTGAAATTCAGTAACGTCGACATTAAGGGCCCCGTCGAAGCGAAGGGACGCTGTCAAGGAGGAAATAACCTGAGATA
CAAGCCTGTTCAGGTTTGTGTAGGTAGGGCGCTCAATGTCGAGTGAGCGCCTGCAAATGTCGTAGATCGCCTCGTTATCGAGAAGAACAGCAACATCTGT
GTGCTCGAGAAGAGAGTGGGTAGATAAGACACTGTTGTATGGCTCGACAACAGAAGTCGAGACCTGAGGAGAAGGATATACGGTAAAACCGAGCTTGGAC
TTCTTCCCATAGTCGACAGACAGCCTTTCCAGAAGGAGGGATCCCAAACCAGATCCAGTTCCTCCTCCGACAGCGTTGAAAACCAGGAAACCTTGCAGAG
ATCCACGATCTCTTTCCCAA