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Detailed information on CNT3052700


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAG0|TBA2_GOSHI, E-value = 1e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Amborella trichopodaOryza sativa25.3216.183.7580forward
CNT30678108Amborella trichopodaSetaria viridis10034.881.65316forward
CNT30533600Amborella trichopodaEucalyptus grandis41.7735.2989.39132forward
CNT30547493Amborella trichopodaIpomoea triloba96.8427.3782.68306forward
CNT30517711Amborella trichopodaJuglans regia27.5316.4291.9587forward
CNT30501067Amborella trichopodaCoffea canephora99.3743.4382.8314forward
CNT30729860Amborella trichopodaCorchorus capsularis43.3514.8186.13137forward
CNT3071007Amborella trichopodaQuercus suber43.3526.8186.13137forward
CNT30379228Amborella trichopodaManihot esculenta48.117.4389.47152forward
CNT30507454Amborella trichopodaNicotiana attenuata44.321.5785140forward
CNT30709081Amborella trichopodaGlycine max93.0439.180.61294forward
CNT3098615Amborella trichopodaSolanum tuberosum23.7314.6289.3375forward
CNT30294619Amborella trichopodaTriticum aestivum98.7337.0582.37312forward
CNT30223592Amborella trichopodaHordeum vulgare22.4718.2187.3271forward
CNT30391405Amborella trichopodaTriticum turgidum49.0520.4285.16155forward
CNT3085161Amborella trichopodaVigna radiata43.3519.5486.86137forward
CNT30553152Amborella trichopodaOryza glaberrima31.9614.687.13101forward
CNT30144688Amborella trichopodaMedicago truncatula46.241.1388.36146forward
CNT30439881Amborella trichopodaAegilops tauschii49.0520.2184.52155forward
CNT30247895Amborella trichopodaAvena sativa49.0520.6783.87155forward
CNT30655883Amborella trichopodaTriticum dicoccoides43.6719.3388.41138forward
CNT30445643Amborella trichopodaSaccharum spontaneum50.3217.9384.28159forward
CNT30136247Amborella trichopodaLolium perenne30.0631.0586.3295forward
CNT30953Amborella trichopodaZea mays43.3514.4883.94137forward
CNT30606894Amborella trichopodaGossypium raimondii47.1540.8283.22149forward
CNT30229012Amborella trichopodaAnanas comosus49.0518.786.45155forward
CNT30217674Amborella trichopodaKalanchoe fedtschenkoi32.2828.5782.35102forward
CNT30655223Amborella trichopodaRosa chinensis25.3231.588.7580forward
CNT30204030Amborella trichopodaHelianthus annuus28.1621.4583.1589forward
CNT30684179Amborella trichopodaTriticum urartu49.0524.7285.16155forward
CNT30721351Amborella trichopodaTriticum spelta49.0523.4185.16155forward
CNT30619808Amborella trichopodaCajanus cajan26.2713.9587.9583forward
CNT30597159Amborella trichopodaOryza meridionalis42.0918.3784.21133forward
CNT30359416Amborella trichopodaLactuca sativa38.6117.0686.89122forward
CNT30570163Amborella trichopodaVitis vinifera48.4218.4886.93153forward
CNT30106557Amborella trichopodaOryza longistaminata45.2566.8283.22143forward
CNT3024728Amborella trichopodaPopulus trichocarpa47.1518.3587.25149forward
CNT30119652Amborella trichopodaCitrus clementina25.3210.586.2580forward
CNT30331462Amborella trichopodaDioscorea rotundata37.9723.3583.33120forward
CNT30148523Amborella trichopodaBrachypodium distachyon42.4120.7884.33134forward
CNT30100634Amborella trichopodaOryza rufipogon49.0544.5485.81155forward
CNT30575645Amborella trichopodaOryza barthii49.0518.2885.16155forward
CNT30582828Amborella trichopodaEchinochloa crusgalli42.4115.6286.57134forward
CNT30117881Amborella trichopodaOryza nivara89.8732.8380.99284forward
CNT30558847Amborella trichopodaPanicum hallii49.052183.87155forward
CNT30724701Amborella trichopodaLupinus angustifolius47.1513.287.92149forward
CNT3040082Amborella trichopodaMarchantia polymorpha38.6129.0583.61122forward

Expression of CNT3052700

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MIGLFSRDNRGIGGEHEVDSRVGDKVSVSGSLYIQRPSANVINGLIVQKHRNIGVLKKRVRGEHTVIRLHN*

Sequence

>CNT3052700
GCCATGGCGAGGGTCACACTTGGCCATCATCGAAGAGGGCTCAAAAGCACTGTTGGTGATCTCAGCAACTGAGAGTTGTTCATGATAGGCCTTTTCAGCA
GAGATAACAGGGGCATAGGAGGAGAGCATGAAGTGGATTCGAGGGTAGGGGACAAGGTTAGTGTAAGTGGGTCGCTCTATATCCAAAGACCTTCTGCAAA
TGTCATAAATGGCCTCATTGTCCAGAAGCACCGCAACATCGGTGTGCTCAAGAAGAGAGTGCGTGGAGAGCACACTGTTATAAGGCTCCACAACTGAAGT
TGAGACCTGAGGAGAT