« Back to Brassica rapa search


Detailed information on CNT30265526


BLAST search results

BLAST vs Swiss-Prot:
sp|P33632|TBB3_ANEPH, E-value = 5e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Brassica rapaOryza sativa31.3244.5682.32311forward
CNT30677760Brassica rapaSetaria viridis41.8945.8784.62416forward
CNT30522101Brassica rapaSetaria italica46.7343.7783.84464forward
CNT30640127Brassica rapaNymphaea colorata27.5934.3486.13274forward
CNT30533600Brassica rapaEucalyptus grandis2874.3386.69278forward
CNT30547493Brassica rapaIpomoea triloba46.4241.2388.29461forward
CNT30517711Brassica rapaJuglans regia21.354087.74212forward
CNT30702815Brassica rapaQuercus lobata16.2143.7586.96161forward
CNT30371538Brassica rapaArabidopsis thaliana43.7191.3791.71434forward
CNT30501067Brassica rapaCoffea canephora22.8631.485.9227forward
CNT30618173Brassica rapaSesamum indicum28.435.5683.33282forward
CNT30727923Brassica rapaCorchorus capsularis79.8666.9884.74793forward
CNT3071007Brassica rapaQuercus suber33.3364.7785.8331forward
CNT30379228Brassica rapaManihot esculenta46.5352.9889.83462forward
CNT30403515Brassica rapaBeta vulgaris23.1689.4983.04230forward
CNT30507454Brassica rapaNicotiana attenuata25.9839.7585.66258forward
CNT30712730Brassica rapaGlycine max36.7671.2985.48365forward
CNT3098615Brassica rapaSolanum tuberosum26.3851.0785.11262forward
CNT30177039Brassica rapaSecale cereale47.1334.4685.04468forward
CNT30284381Brassica rapaTriticum aestivum41.5954.0687.17413forward
CNT30224141Brassica rapaHordeum vulgare36.3553.0982.55361forward
CNT30391523Brassica rapaTriticum turgidum44.0159.2984.44437forward
CNT3085161Brassica rapaVigna radiata25.9836.885.66258forward
CNT30555352Brassica rapaOryza glaberrima43.147.3581.07428forward
CNT30144939Brassica rapaMedicago truncatula21.9544.7687.16218forward
CNT30439881Brassica rapaAegilops tauschii35.9546.5485.99357forward
CNT30249355Brassica rapaAvena sativa49.2465.0384.66489forward
CNT30655883Brassica rapaTriticum dicoccoides46.7364.9986.42464forward
CNT3059767Brassica rapaArabidopsis lyrata28.640.0691.9284forward
CNT3075316Brassica rapaBrassica juncea27.993.2796.75277forward
CNT30445850Brassica rapaSaccharum spontaneum47.1351.4385.04468forward
CNT30136973Brassica rapaLolium perenne23.1654.7685.65230forward
CNT30953Brassica rapaZea mays45.0247.2584.56447forward
CNT3041219Brassica rapaChlamydomonas reinhardtii21.4537.3782.16213forward
CNT30606894Brassica rapaGossypium raimondii29.418082.88292forward
CNT30229012Brassica rapaAnanas comosus23.8728.5987.34237forward
CNT30219368Brassica rapaKalanchoe fedtschenkoi23.1639.3885.65230forward
CNT30208739Brassica rapaHelianthus annuus21.0552.9189.95209forward
CNT30716286Brassica rapaMalus domestica golden31.0223.5883.44308forward
CNT30689745Brassica rapaTriticum urartu41.5954.287.41413forward
CNT30361562Brassica rapaSorghum bicolor47.1347.3283.97468forward
CNT30358630Brassica rapaLactuca sativa26.2866.5882.38261forward
CNT30371316Brassica rapaOryza glumipatula28.423.984.4282forward
CNT30482824Brassica rapaChara braunii25.5833.3882.68254forward
CNT30430260Brassica rapaPapaver somniferum21.3536.4389.15212forward
CNT30571197Brassica rapaVitis vinifera30.4176.6586.09302forward
CNT3024728Brassica rapaPopulus trichocarpa27.1933.2588.15270forward
CNT30104125Brassica rapaOryza rufipogon46.2234.7581.26459forward
CNT30578286Brassica rapaOryza barthii62.4464.5882.26620forward
CNT30582828Brassica rapaEchinochloa crusgalli45.2252.3385.3449forward
CNT30117950Brassica rapaOryza nivara36.2543.4381.67360forward
CNT30558847Brassica rapaPanicum hallii23.5631.7187.18234forward
CNT30724701Brassica rapaLupinus angustifolius44.6139.2487.81443forward

Expression of CNT30265526

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MEAGSKALFVISATESCSWKGTSADVVDSFIVEEDRDISVFQEGVRGEDAVVRLNDRGRDLWRWVNSEPELGLFPVVDREPLEKK*

>peptide 2 (32 aa)
MVRLVLMVPTAALTSLGTTSPRYIKQQAMYFP*

>peptide 3 (46 aa)
NINPNRESTTIEIQKEINRISSLKKTKGSSQECFEPIHANTKDNRI*

>peptide 4 (41 aa)
MRSNLWSILENTSATLVELEIIHTALCTLARSPPGTTVGGW*

Sequence

>CNT30265526
AATATAAACCCAAATAGAGAGAGTACCACAATAGAAATTCAAAAAGAAATAAATCGGATAAGTAGTTTGAAAAAAACAAAGGGCTCGTCACAAGAGTGTT
TCGAACCCATTCACGCAAACACAAAGGATAACAGAATTTAACATTTCGAAACTTTATTCTTCTCAGTACTCCTCGCCTTCGTCATCCTCATCATCGCCAC
CTTCAGCACCAACCTCCTCATAATCCTTCTCAAGAGCTGCAAGATCCTCACGAGCCTCAGAGAATTCTCCTTCCTCCATACCCTCACCCACATACCAGTG
AACGAAAGCACGCTTGGCGTACATGAGATCGAACTTGTGGTCAATCCTCGAGAACACCTCAGCAACACTCGTGGAGTTGGAGATCATACACACAGCTCTC
TGCACTTTAGCAAGGTCACCTCCTGGAACAACAGTTGGTGGCTGGTAGTTTATACCGCACTTGAATCCAGTAGGACACCAGTCAACAAACTGGATGGTAC
GCTTGGTCTTGATGGTTCCAACAGCTGCGTTGACGTCCTTGGGGACAACATCACCACGGTACATCAAACAGCAAGCCATGTATTTCCCGTGACGAGGGTC
ACACTTGGCCATCATGGAAGCTGGCTCGAAAGCACTGTTTGTGATCTCAGCAACAGAGAGTTGCTCGTGGAAGGGAACGTCTGCAGATGTCGTAGATAGC
TTCATTGTCGAGGAGGATAGAGACATCAGTGTGTTCCAAGAGGGAGTGAGGGGAGAGGACGCGGTTGTAAGGCTCAACGACAGAGGTAGAGACCTGTGGA
GATGGGTAAACAGTGAACCCGAGCTTGGACTTTTTCCCGTAGTCGACAGAGAGCCTCTCGAGAAGAAGTGATCCAAGACCAGATCCAGTACCTCCTCCAA
CGGCGTTGAAGACAAGGAACCCTTGGAGACCAGTGCAGTTATCAGCAAGCTTCCTGATACGGTCCAAACACAGATCAACAATTTCCTTCCCAA