« Back to Zea mays search


Detailed information on CNT30953


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 1e-141

BLAST vs NONCODE:
NONGMAT000219, E-value = 9e-62

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Zea maysOryza sativa33.1944.9989.17314forward
CNT30677979Zea maysSetaria viridis47.8947.7393.38453forward
CNT30522101Zea maysSetaria italica54.3348.4993.39514forward
CNT30533600Zea maysEucalyptus grandis29.4974.689.61279forward
CNT30547493Zea maysIpomoea triloba49.6842.0486.81470forward
CNT30517711Zea maysJuglans regia19.8735.4785.11188forward
CNT30702815Zea maysQuercus lobata17.4444.8485.45165forward
CNT30371538Zea maysArabidopsis thaliana40.4980.6383.03383forward
CNT30501067Zea maysCoffea canephora34.3644.9584.62325forward
CNT30618173Zea maysSesamum indicum28.0133.4287.17265forward
CNT30729860Zea maysCorchorus capsularis52.8554.0584.8500forward
CNT3071007Zea maysQuercus suber39.9673.9783.33378forward
CNT30379228Zea maysManihot esculenta60.6865.8386.93574forward
CNT30507454Zea maysNicotiana attenuata40.0658.484.96379forward
CNT30712730Zea maysGlycine max42.2878.1283.75400forward
CNT3098615Zea maysSolanum tuberosum28.2252.0584.27267forward
CNT30177039Zea maysSecale cereale63.1143.9688.94597forward
CNT30295550Zea maysTriticum aestivum48.8466.4790.04462forward
CNT30224141Zea maysHordeum vulgare36.0550.1588.27341forward
CNT30391405Zea maysTriticum turgidum54.4467.8590.29515forward
CNT3085161Zea maysVigna radiata33.445.0883.23316forward
CNT30555384Zea maysOryza glaberrima52.3357.8989.29495forward
CNT30144688Zea maysMedicago truncatula21.1456.3485200forward
CNT30439881Zea maysAegilops tauschii54.0266.6289.63511forward
CNT30249355Zea maysAvena sativa47.3659.5791.07448forward
CNT30655883Zea maysTriticum dicoccoides54.9772.8390.19520forward
CNT30265526Zea maysBrassica rapa47.2545.0284.56447forward
CNT30445850Zea maysSaccharum spontaneum63.6466.1594.68602forward
CNT30136973Zea maysLolium perenne25.0556.4388.61237forward
CNT3041219Zea maysChlamydomonas reinhardtii23.3638.7788.24221forward
CNT30229012Zea maysAnanas comosus23.5726.987.44223forward
CNT30217674Zea maysKalanchoe fedtschenkoi19.1350.786.19181forward
CNT30208739Zea maysHelianthus annuus21.5651.6586.76204forward
CNT30689745Zea maysTriticum urartu44.1954.8689418forward
CNT30361562Zea maysSorghum bicolor50.4248.2393.08477forward
CNT30597072Zea maysOryza meridionalis36.2647.2587.76343forward
CNT30356256Zea maysLactuca sativa21.7839.7782.04206forward
CNT30371316Zea maysOryza glumipatula50.5340.5189.33478forward
CNT30482824Zea maysChara braunii29.1836.2782.61276forward
CNT30430260Zea maysPapaver somniferum20.5133.3385.05194forward
CNT30570163Zea maysVitis vinifera48.7355.6884.16461forward
CNT3052700Zea maysAmborella trichopoda14.4843.3583.94137forward
CNT30106557Zea maysOryza longistaminata21.3594.3991.58202forward
CNT3024728Zea maysPopulus trichocarpa23.6827.5985.71224forward
CNT30119652Zea maysCitrus clementina22.327.6983.89211forward
CNT30148523Zea maysBrachypodium distachyon24.5235.9789.66232forward
CNT30104125Zea maysOryza rufipogon63.1145.1989.28597forward
CNT30578324Zea maysOryza barthii38.0536.6688.61360forward
CNT30582828Zea maysEchinochloa crusgalli62.7969.2392.09594forward
CNT30117950Zea maysOryza nivara53.8161.489.59509forward
CNT30593783Zea maysEragrostis curvula20.436.5589.12193forward
CNT30558847Zea maysPanicum hallii43.0255.1591.65407forward
CNT30726397Zea maysLupinus angustifolius61.3154.1584.31580forward

Expression of CNT30953

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MAGIALGHHGGWLEGAVGDLGHRQLLVVGLLSRDDWSIGGKHEVDPRVGHQVGLELIHIHVKSTIEPQGGSQG*

>peptide 2 (41 aa)
MRSNLWSMRENTSTTLVELEIMHTARCTLARSPPGTTLGGW*

>peptide 3 (73 aa)
MPHLKPVGHQSTNWMVRLVLMVATAAFTSLGTTSPRYMRQQAMYLPWRGSHLAIMEDGSKALLVISATDSCSW*

Sequence

>CNT30953
GAACATATATATAGCTAGAGATCGTACTATCTTCTGCAATGTGATATAAAGCATCAAACAATCCATACTACTCAATACTCATGACAAGACGCAAGAAAAT
CATCCGCCGACTCGATTTTACTGATGACAAAAGATGAACAAGGTGGTAAATGTAAAGCATCTCCGAGATGAAGCAACAACGTAAACAGCCATAATTATTC
TCAATAACCCGGTAGCAATGCAGGGGAATTAACAACTCTTACAACATCAGGTGTTGTAAACCACACAATACTTCAGAACAGACACACATAACACGATAGC
AGGAGCAACTCTCGGCAGATCACGGGATAAGGGCAGCACACTGTCCTTCTCGAGCGCCGCCAGGTCCTCACGGGCCTCAGAGAACTCACCTTCCTCCATA
CCCTCACCGACGTACCAGTGCACGAAGGCACGCTTGGCGTACATGAGGTCGAACTTGTGGTCGATGCGGGAGAACACCTCCACAACACTGGTGGAGTTGG
AGATCATGCACACGGCACGCTGCACCTTGGCCAGGTCACCACCAGGCACCACACTTGGAGGCTGGTAGTTAATGCCGCACTTAAAGCCAGTTGGGCACCA
GTCCACAAACTGGATGGTGCGCTTGGTCTTGATGGTGGCCACAGCAGCATTCACATCCTTGGGGACCACATCACCACGGTACATGAGGCAGCAGGCCATG
TACTTACCATGGCGGGGATCGCACTTGGCCATCATGGAGGATGGCTCGAAGGCGCTGTTGGTGATCTCGGCCACAGACAGCTGCTCGTGGTAGGCCTTCT
CAGCAGAGATGACTGGAGCATAGGAGGAAAGCATGAAGTGGATCCTCGGGTAGGGCACCAAGTTGGTCTGGAACTCATTCACATCCACGTTAAGAGCACC
ATCGAACCTCAGGGAGGCAGTCAGGGATGAGATGACCTGTACAACG