Detailed information on CNT30575645


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41874|TBG3_MAIZE, E-value = 8e-10

BLAST vs NONCODE:
NONGMAT000220, E-value = 6e-81

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678108Oryza barthiiSetaria viridis70.9966.390.03602forward
CNT30522101Oryza barthiiSetaria italica7358.490.15619forward
CNT30640127Oryza barthiiNymphaea colorata36.5638.8586.45310forward
CNT30547615Oryza barthiiIpomoea triloba72.0599.3584.94611forward
CNT30517675Oryza barthiiJuglans regia30.4242.7285.27258forward
CNT30501067Oryza barthiiCoffea canephora7385.6281.58619forward
CNT30727923Oryza barthiiCorchorus capsularis39.3928.2186.23334forward
CNT30379324Oryza barthiiManihot esculenta28.0724.6486.55238forward
CNT30403515Oryza barthiiBeta vulgaris28.6694.5585.6243forward
CNT30507454Oryza barthiiNicotiana attenuata32.3142.2282.85274forward
CNT30709081Oryza barthiiGlycine max74.1783.6482.03629forward
CNT30177336Oryza barthiiSecale cereale72.5253.6689.11615forward
CNT30294619Oryza barthiiTriticum aestivum53.7754.1689.91456forward
CNT30223592Oryza barthiiHordeum vulgare12.7427.6994.44108forward
CNT30392462Oryza barthiiTriticum turgidum31.3765.5291.73266forward
CNT3085161Oryza barthiiVigna radiata31.1337.6682.58264forward
CNT30237104Oryza barthiiBrassica oleracea2360.1986.15195forward
CNT30144688Oryza barthiiMedicago truncatula18.6344.5184.18158forward
CNT3059767Oryza barthiiArabidopsis lyrata18.9922.7184.47161forward
CNT3075316Oryza barthiiBrassica juncea30.6687.5487.69260forward
CNT30611949Oryza barthiiArabis alpina13.9234.190.68118forward
CNT30445136Oryza barthiiSaccharum spontaneum40.4548.7291.25343forward
CNT3010240Oryza barthiiZea mays38.835.0791.19329forward
CNT30606894Oryza barthiiGossypium raimondii39.3991.5185.63334forward
CNT30655223Oryza barthiiRosa chinensis22.5275.284.82191forward
CNT30716286Oryza barthiiMalus domestica golden39.1525.4287.05332forward
CNT30684179Oryza barthiiTriticum urartu22.4130.392.11190forward
CNT30721658Oryza barthiiTriticum spelta24.6550.3691.39209forward
CNT30362155Oryza barthiiSorghum bicolor70.755589.5600forward
CNT30619808Oryza barthiiCajanus cajan21.730.9284.78184forward
CNT30359250Oryza barthiiLactuca sativa39.0348.6880.06331forward
CNT3052700Oryza barthiiAmborella trichopoda18.2849.0585.16155forward
CNT3024647Oryza barthiiPopulus trichocarpa37.0360.6283.12314forward
CNT30119652Oryza barthiiCitrus clementina24.2927.0382.04206forward
CNT30331462Oryza barthiiDioscorea rotundata20.7534.2483.52176forward
CNT30148523Oryza barthiiBrachypodium distachyon27.3635.9793.53232forward
CNT30117881Oryza barthiiOryza nivara48.747.7590.31413forward
CNT30558847Oryza barthiiPanicum hallii32.3137.1390.88274forward
CNT30726236Oryza barthiiLupinus angustifolius38.5640.3285.93327forward
CNT3040082Oryza barthiiMarchantia polymorpha32.3165.2483.21274forward

Expression of CNT30575645

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MVRLVLMVATAAFTSLGTTSPRYMRQQAMYLPWRGSHLAIMEDGSKALLVISATESCSW*

>peptide 2 (33 aa)
MASLSSRTATSVCSRREWVERTLLYGSTTEVET*

>peptide 3 (38 aa)
MVGLLRRDHWSVGRKHEVDPWVGHKVGRSMSRERRQMS*

Sequence

>CNT30575645
ATAAAATTGAACAAACGCGCATATTATAAGTGACGAAGCGGTCTCACATAACACAGGGCACACAGGTTACAACAACGAGGGTTGTAAGCCCATTAAGCCC
CAAACATCAGATCACCACAAGCAAATGCCTCGAAGACACACGCACACGGCAACAGGATAACTCCACACTGGCAGATCATGGGATAGCAGCAGTTATCAAT
CAGGCCTTGACACACAGAACCCCGTCGGGCACCAGTCCACGAATTGGATGGTGCGCTTGGTCTTGATGGTGGCGACGGCGGCGTTCACGTCCTTGGGCAC
GACGTCGCCGCGGTACATGAGGCAGCAGGCCATGTACTTGCCGTGGCGAGGGTCGCACTTGGCCATCATGGAGGATGGCTCGAAGGCGCTGTTGGTGATC
TCGGCAACGGAGAGTTGCTCATGGTAGGCCTTCTCCGCAGAGATCACTGGAGCGTAGGACGAAAGCATGAAGTGGATCCTTGGGTAGGGCACAAGGTTGG
GCGCTCAATGTCAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTATCAAGCAGAACAGCAACATCAGTGTGCTCAAGGAGGGAGTGGGTAGAGAGG
ACACTGTTGTATGGCTCAACCACAGAGGTGGAGACCTGAGGGGATGGGTACACAGTGAACCCAAGCTTGGACTTCTTGCCATAGTCCACAGAAAGGCGCT
CCAGGAGAAGGGAACCAAGACCAGAGCCCGTTCCACCTCCAACAGCGTTGAACACAAGGAAACCTTGGAGACCAGTGCAGTTGTCAGCAAGCTTCCTGAT
GCGGTCAAGGCACAGATCAACAATCTCCTTGCCAACTGTAAAGATTTA