« Back to Setaria italica search


Detailed information on CNT30522101


BLAST search results

BLAST vs Swiss-Prot:
sp|P20364|TBB1_DAUCA, E-value = 1e-45

BLAST vs NONCODE:
NONGMAT000220, E-value = 7e-69

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Setaria italicaOryza sativa29.2544.4191.94310forward
CNT30678108Setaria italicaSetaria viridis60.7570.9396.27644forward
CNT30533600Setaria italicaEucalyptus grandis29.7284.2289.84315forward
CNT30547493Setaria italicaIpomoea triloba79.8175.6783.45846forward
CNT30517675Setaria italicaJuglans regia24.0642.2284.71255forward
CNT30371538Setaria italicaArabidopsis thaliana39.2587.5882.45416forward
CNT30501067Setaria italicaCoffea canephora31.7946.6183.98337forward
CNT30618173Setaria italicaSesamum indicum25.0933.5485.34266forward
CNT30727923Setaria italicaCorchorus capsularis39.6235.4785.71420forward
CNT3071007Setaria italicaQuercus suber26.7955.5883.1284forward
CNT30379228Setaria italicaManihot esculenta48.8759.485.91518forward
CNT30403515Setaria italicaBeta vulgaris22.1791.4486.81235forward
CNT30507454Setaria italicaNicotiana attenuata26.5143.386.83281forward
CNT30712730Setaria italicaGlycine max37.7478.1284.5400forward
CNT3098615Setaria italicaSolanum tuberosum22.3646.287.76237forward
CNT30177336Setaria italicaSecale cereale87.6481.0687.94929forward
CNT30294619Setaria italicaTriticum aestivum59.1574.4789.15627forward
CNT30224141Setaria italicaHordeum vulgare33.7752.6592.74358forward
CNT30391523Setaria italicaTriticum turgidum45.3865.2691.68481forward
CNT3085161Setaria italicaVigna radiata26.9840.884.62286forward
CNT30555352Setaria italicaOryza glaberrima45.5753.4390.48483forward
CNT30439881Setaria italicaAegilops tauschii41.0456.7190.8435forward
CNT30249355Setaria italicaAvena sativa43.8761.8493.12465forward
CNT30655883Setaria italicaTriticum dicoccoides54.5380.9590.66578forward
CNT3075316Setaria italicaBrassica juncea24.5387.5486.54260forward
CNT30265526Setaria italicaBrassica rapa43.7746.7383.84464forward
CNT30445850Setaria italicaSaccharum spontaneum54.5363.5292.39578forward
CNT30136973Setaria italicaLolium perenne22.3656.4390.3237forward
CNT30953Setaria italicaZea mays48.4954.3393.39514forward
CNT3041219Setaria italicaChlamydomonas reinhardtii20.6638.4293.15219forward
CNT30606894Setaria italicaGossypium raimondii32.0893.1585.88340forward
CNT30208739Setaria italicaHelianthus annuus19.2551.6586.76204forward
CNT30689745Setaria italicaTriticum urartu45.4763.2590.25482forward
CNT30721658Setaria italicaTriticum spelta19.7250.3693.3209forward
CNT30362155Setaria italicaSorghum bicolor69.0667.0992.9732forward
CNT30597072Setaria italicaOryza meridionalis32.3647.2589.21343forward
CNT30371350Setaria italicaOryza glumipatula41.1353.1789.91436forward
CNT30482824Setaria italicaChara braunii27.9238.983.45296forward
CNT30570163Setaria italicaVitis vinifera36.9847.3484.44392forward
CNT3024728Setaria italicaPopulus trichocarpa25.7533.6284.62273forward
CNT30147962Setaria italicaBrachypodium distachyon19.1559.8890.64203forward
CNT30104125Setaria italicaOryza rufipogon54.5343.7589.79578forward
CNT30575645Setaria italicaOryza barthii58.47390.15619forward
CNT30582828Setaria italicaEchinochloa crusgalli54.6267.4891.88579forward
CNT30117896Setaria italicaOryza nivara48.4960.5491.25514forward
CNT30593783Setaria italicaEragrostis curvula18.2136.5593.26193forward
CNT30558847Setaria italicaPanicum hallii30.5743.993.83324forward
CNT30726259Setaria italicaLupinus angustifolius49.3463.0984.32523forward

Expression of CNT30522101

Peptides detected in this lncRNA

>peptide 1 (50 aa)
GSGAGRGQITVQTDTPNRHTDTQQDKIGATRADHRITAAHRPDTAAGSIV*

>peptide 2 (39 aa)
MAGVALGHHGGRLKGAVGDLCNRQLLMVGLLSRDDWCIG*

>peptide 3 (41 aa)
MRSNLWSMRENTSTTLVELEIMHTARCTLARSPPGTTLGGW*

>peptide 4 (48 aa)
MASLSSRTATSVCSRREWVDRTLLYGSTTEVETWGDGYTVNPSLDFLP*

>peptide 5 (59 aa)
MKWILGWGAQCQGSGGRCHRWPHCQAEQQHQCARGGSGWTGHCCMAQPLRWRPGEMGTQ*

>peptide 6 (73 aa)
MPHLNPVGHQSTNWMVRLVLMVATAALTSLGTTSPRYMRQQAMYLPWRGSHLAIMEDGSKALLVISATDSCSW*

Sequence

>CNT30522101
CGGGAGCGGAGCGGGGCGGGGACAGATAACAGTTCAAACCGACACACCGAACCGACACACCGACACACAACAAGATAAGATAGGAGCCACTCGGGCAGAT
CATAGGATAACCGCGGCACACAGGCCTGACACAGCAGCAGGAAGCATCGTCTAGTACTCGTCACCCTCGTCTCCTTCCTCGCCCTCGTCGAACTCAGCGC
CGACCTCCTCGTAGTCCTTCTCGAGCGCAGCCAGGTCCTCACGGGCCTCAGAGAACTCGCCCTCCTCCATGCCCTCACCCACGTACCAGTGAACGAAGGC
ACGCTTGGCGTACATGAGGTCAAACTTGTGGTCGATGCGGGAGAACACCTCGACCACGCTGGTGGAGTTGGAGATCATGCACACGGCACGCTGCACCTTG
GCCAGGTCACCGCCAGGCACCACGCTGGGGGGCTGGTAGTTGATGCCGCACTTGAACCCAGTGGGGCACCAGTCCACGAACTGGATGGTGCGCTTGGTCT
TGATGGTGGCAACAGCAGCGTTGACGTCCTTGGGCACCACATCACCACGGTACATGAGGCAGCAGGCCATGTACTTGCCATGGCGGGGGTCGCACTTGGC
CATCATGGAGGACGGCTCAAAGGCGCTGTTGGTGATCTCTGCAACAGACAGCTGCTCATGGTAGGCCTTCTCAGCAGAGATGACTGGTGCATAGGATGAA
AGCATGAAGTGGATCCTCGGGTGGGGCGCTCAATGTCAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGTCAAGCAGAACAGCAACATCAGTGTG
CTCGAGGAGGGAGTGGGTGGACAGGACACTGTTGTATGGCTCAACCACTGAGGTGGAGACCTGGGGAGATGGGTACACAGTGAACCCGAGCTTGGACTTC
TTGCCATAGTCAACAGACAGACGCTCAAGGAGGAGAGAACCAAGACCAGAGCCTGTTCCTCCACCAACAGCATTGAAGACAAGGAAGCCCTGGAGACCAG
TGCAGTTGTCGGCAAGCTTCCTGATGCGGTCAAGGCACAGGTCAACAATCTCCTTGCCAA