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Detailed information on CNT30517675


BLAST search results

BLAST vs Swiss-Prot:
sp|P46259|TBA1_PEA, E-value = 5e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Juglans regiaOryza sativa41.8950.9180.63253forward
CNT30677947Juglans regiaSetaria viridis40.2336.5483.95243forward
CNT30522101Juglans regiaSetaria italica42.2224.0684.71255forward
CNT30501067Juglans regiaCoffea canephora38.9132.585.96235forward
CNT30727923Juglans regiaCorchorus capsularis41.3921.1189.2250forward
CNT3071006Juglans regiaQuercus suber30.4638.181.52184forward
CNT30379324Juglans regiaManihot esculenta40.425.2690.16244forward
CNT30403515Juglans regiaBeta vulgaris40.5695.3387.76245forward
CNT30712809Juglans regiaGlycine max37.7568.0688.6228forward
CNT30283673Juglans regiaTriticum aestivum23.1845.4585.71140forward
CNT30220716Juglans regiaHordeum vulgare19.5451.7583.9118forward
CNT30383546Juglans regiaTriticum turgidum21.8544.5984.85132forward
CNT30237104Juglans regiaBrassica oleracea17.8833.3388.89108forward
CNT30555279Juglans regiaOryza glaberrima42.2281.7383.92255forward
CNT30435344Juglans regiaAegilops tauschii23.5145.6688.03142forward
CNT3075316Juglans regiaBrassica juncea39.5780.4784.1239forward
CNT30611949Juglans regiaArabis alpina19.0433.2487.83115forward
CNT30445136Juglans regiaSaccharum spontaneum42.3836.3683.2256forward
CNT30136247Juglans regiaLolium perenne21.6942.8185.5131forward
CNT3010240Juglans regiaZea mays40.2325.9183.95243forward
CNT3041150Juglans regiaChlamydomonas reinhardtii33.1143.8679200forward
CNT30606894Juglans regiaGossypium raimondii41.3968.4988.4250forward
CNT30648424Juglans regiaRosa chinensis14.0726.4884.7185forward
CNT30210906Juglans regiaHelianthus annuus32.1274.3381.96194forward
CNT30716286Juglans regiaMalus domestica golden41.8919.3786.17253forward
CNT30689747Juglans regiaTriticum urartu23.0145.2885.61139forward
CNT30721658Juglans regiaTriticum spelta34.4450.1283.65208forward
CNT30362155Juglans regiaSorghum bicolor40.2322.2783.54243forward
CNT30619808Juglans regiaCajanus cajan30.4630.9285.87184forward
CNT30597159Juglans regiaOryza meridionalis34.9329.1484.36211forward
CNT30356256Juglans regiaLactuca sativa18.3821.4381.98111forward
CNT30371316Juglans regiaOryza glumipatula35.4318.1482.71214forward
CNT3024757Juglans regiaPopulus trichocarpa40.493.4988.93244forward
CNT30331419Juglans regiaDioscorea rotundata10.2622.0688.7162forward
CNT30147962Juglans regiaBrachypodium distachyon33.4459.5982.67202forward
CNT30575645Juglans regiaOryza barthii42.7230.4285.27258forward
CNT30117847Juglans regiaOryza nivara35.4322.8483.18214forward
CNT3065151Juglans regiaSelaginella moellendorffii12.0935.4484.9373forward
CNT3040082Juglans regiaMarchantia polymorpha17.2224.7683.65104forward

Expression of CNT30517675

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MPLFPFIFNLIMQLSIKTQKLILPRSSSMFIN*

Sequence

>CNT30517675
TAGCAACATAATCTACTAAGCCCAACATAAATGTGACCCTGTTCATAAAAAAGTACATATGCCTCTTTTTCCATTCATATTTAATCTAATCATGCAATTA
TCTATCAAAACACAGAAGTTAATACTTCCTAGATCATCTAGCATGTTTATTAATTAGCAGCACCAGATTCACAATTGTGAGCATCCATAGTGCTATATTC
CCCACACAGGTACATGAAAGTTTTCCTAATTTCTTAAAAATGAATTCAGTGCGGATATCAACCTGAGAGACAAGCCGGTTGAGGTTGGTGTAGGTGGGTC
TCTCAATATCAAGGGAACGCCTGCAAATATCATAGATGGAGAGAGTGCGTTGAGAGGACACTGTTGTACGGCTCAACAACAGATGTGGAGACCTGGGGAG
AAGGGTAGACTGTGAAACCCAGCTTTGATTTCTTGCCATAGTCAACGGACAATCGCTCCAAGAGAAGGGAGCCAAGCCCAGAACCAGTGCCTCCACCAAC
AGCATTGAATACTAGGAATCCTTGGAGGCCAGTGCAGTTGTCAGCAAGCTTTCTAATACGGTCCAAGCACAGATCAACAATCTCCTTGCCAACTGAAATA
GGAA