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Detailed information on CNT30445643


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 9e-143

BLAST vs NONCODE:
NONGMAT000219, E-value = 2e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533600Saccharum spontaneumEucalyptus grandis37.288.2486.36330forward
CNT30547493Saccharum spontaneumIpomoea triloba63.9250.7285.19567forward
CNT30517711Saccharum spontaneumJuglans regia23.7939.8185.31211forward
CNT30371538Saccharum spontaneumArabidopsis thaliana48.2590.1183.64428forward
CNT30501067Saccharum spontaneumCoffea canephora37.6646.284.43334forward
CNT30618173Saccharum spontaneumSesamum indicum30.2133.887.69268forward
CNT30729860Saccharum spontaneumCorchorus capsularis56.3754.0585.8500forward
CNT3071007Saccharum spontaneumQuercus suber42.6273.9782.01378forward
CNT30379228Saccharum spontaneumManihot esculenta69.4570.6486.2616forward
CNT30507454Saccharum spontaneumNicotiana attenuata42.8458.5585380forward
CNT3098615Saccharum spontaneumSolanum tuberosum30.152.0585.39267forward
CNT30177039Saccharum spontaneumSecale cereale74.9748.9789.92665forward
CNT30391405Saccharum spontaneumTriticum turgidum58.0667.8590.29515forward
CNT3085161Saccharum spontaneumVigna radiata35.6345.0883.86316forward
CNT30144688Saccharum spontaneumMedicago truncatula22.2155.4984.77197forward
CNT30439881Saccharum spontaneumAegilops tauschii57.6166.6290.22511forward
CNT30655883Saccharum spontaneumTriticum dicoccoides65.6181.5190.89582forward
CNT30136973Saccharum spontaneumLolium perenne26.7256.4389.45237forward
CNT30219368Saccharum spontaneumKalanchoe fedtschenkoi25.9339.3885.22230forward
CNT30208739Saccharum spontaneumHelianthus annuus2351.6586.27204forward
CNT30689745Saccharum spontaneumTriticum urartu54.3463.2591.08482forward
CNT30721351Saccharum spontaneumTriticum spelta28.6438.3791.73254forward
CNT30482824Saccharum spontaneumChara braunii3136.1482.91275forward
CNT30570163Saccharum spontaneumVitis vinifera52.255.9285.1463forward
CNT3052700Saccharum spontaneumAmborella trichopoda17.9350.3284.28159forward
CNT3024728Saccharum spontaneumPopulus trichocarpa30.3333.1385.87269forward
CNT30119652Saccharum spontaneumCitrus clementina25.0329.1381.98222forward
CNT30148523Saccharum spontaneumBrachypodium distachyon27.2837.5290.91242forward
CNT30558847Saccharum spontaneumPanicum hallii45.8955.1590.91407forward

Expression of CNT30445643

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MRSNLWSMRENTSTTLVELEIMHTARCTLARSPPGTTLGGW*

>peptide 2 (73 aa)
MPHLKPVGHQSTNWMVRLVLIVATAAFTSLGTTSPRYMRQQAMYLPWRGSHLAIMDDGSKALLVISATDSCSW*

>peptide 3 (68 aa)
MAGVTLGHHGRWLKGAVGDFSHGQLLVVGLLSGDNWSVGGKHEVDPRVGHQVGLELIHIHIKSTIKPQ*

Sequence

>CNT30445643
TAGGCAACCATAACGATTCTTAATAACCCAGTAACAAAGCAGAGGAATTAACCAAGTCTTACAACATCAAGTGTTGTAAACCACAGCACACAAGGACAGA
TAAGTTCGGAACCGACAGACACACAACACGATAGTACGAGCCACTCAGGGCAGATCACGGGATACTTGCAGCACACAGGCCTGACGCTGTAGCACCAGAA
AGCTTCTAGTACTCGTCGCCCTCGTCGCCATCCTCACCCTCGTCGAACTCAGCACCGACCTCCTCGTAGTCCTTCTCAAGGGCTGCCAGATCCTCGCGGG
CCTCGGAGAACTCACCCTCCTCCATACCCTCACCCACGTACCAGTGCACGAAGGCACGCTTGGCGTACATGAGGTCAAACTTGTGGTCGATGCGGGAGAA
CACCTCCACAACGCTGGTGGAGTTGGAGATCATGCACACAGCGCGCTGCACCTTGGCCAGGTCACCGCCAGGCACCACACTTGGAGGCTGGTAGTTGATG
CCACACTTGAAGCCAGTCGGGCACCAGTCCACAAACTGGATGGTGCGCTTGGTCTTGATAGTGGCCACAGCAGCATTCACGTCCTTGGGGACCACGTCAC
CACGGTACATGAGGCAGCAGGCCATGTACTTGCCATGGCGGGGGTCACACTTGGCCATCATGGACGATGGCTCAAAGGCGCTGTTGGTGATTTCAGCCAC
GGACAGCTGCTCGTGGTAGGCCTTCTCAGCGGAGATAACTGGAGCGTAGGAGGAAAGCATGAAGTGGATCCTCGGGTAGGGCACCAGGTTGGTCTGGAAC
TCATTCACATCCACATTAAGAGCACCATCAAACCTCAATGAGGCAGTCAGGGATGAGATGACCTGCACAAGATCAGTAACAGATAAT