« Back to Oryza sativa search


Detailed information on CNT30694759


BLAST search results

BLAST vs Swiss-Prot:
sp|Q02245|TBA5_MAIZE, E-value = 1e-72

BLAST vs NONCODE:
NONGMAT000220, E-value = 1e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521842Oryza sativaSetaria italica60.3632.583300forward
CNT30640127Oryza sativaNymphaea colorata60.1637.4781.61299forward
CNT30517675Oryza sativaJuglans regia50.9141.8980.63253forward
CNT30501067Oryza sativaCoffea canephora74.6551.3181.67371forward
CNT3071006Oryza sativaQuercus suber55.3356.9481.82275forward
CNT30403515Oryza sativaBeta vulgaris40.4478.2184.58201forward
CNT30710214Oryza sativaGlycine max30.585086.84152forward
CNT30296175Oryza sativaTriticum aestivum43.6674.3285.25217forward
CNT30220716Oryza sativaHordeum vulgare20.1243.8687100forward
CNT30391993Oryza sativaTriticum turgidum43.6691.1885.25217forward
CNT30237104Oryza sativaBrassica oleracea14.4922.2284.7272forward
CNT30555279Oryza sativaOryza glaberrima44.4770.8382.35221forward
CNT30435344Oryza sativaAegilops tauschii30.3848.5584.11151forward
CNT3059767Oryza sativaArabidopsis lyrata30.1821.1680150forward
CNT30611949Oryza sativaArabis alpina44.2763.5880.91220forward
CNT30451548Oryza sativaSaccharum spontaneum35.619.392.66177forward
CNT30136247Oryza sativaLolium perenne20.7233.6688.35103forward
CNT301007Oryza sativaZea mays62.5858.7981.35311forward
CNT3041150Oryza sativaChlamydomonas reinhardtii52.9257.6879.47263forward
CNT30606894Oryza sativaGossypium raimondii53.5272.8882.33266forward
CNT30229091Oryza sativaAnanas comosus31.7944.1382.91158forward
CNT30655223Oryza sativaRosa chinensis36.0270.4779.33179forward
CNT30716286Oryza sativaMalus domestica golden86.9233.0881.94432forward
CNT30683531Oryza sativaTriticum urartu28.1745.687.14140forward
CNT30721658Oryza sativaTriticum spelta36.6243.8685.16182forward
CNT30619808Oryza sativaCajanus cajan37.0230.9284.78184forward
CNT30596030Oryza sativaOryza meridionalis28.1758.3387.14140forward
CNT3052700Oryza sativaAmborella trichopoda16.125.3283.7580forward
CNT30106559Oryza sativaOryza longistaminata13.8830.888.4169forward
CNT3024647Oryza sativaPopulus trichocarpa63.7861.280.13317forward
CNT30331462Oryza sativaDioscorea rotundata20.3219.6583.17101forward
CNT30147962Oryza sativaBrachypodium distachyon26.9639.5388.81134forward
CNT30100745Oryza sativaOryza rufipogon28.1712.1587.14140forward
CNT30579614Oryza sativaEchinochloa crusgalli20.1225.3286100forward
CNT30496537Oryza sativaDigitaria exilis21.9348.2388.99109forward
CNT30174517Oryza sativaVigna angularis27.7768.6684.06138forward
CNT30726253Oryza sativaLupinus angustifolius59.1580.7783.67294forward
CNT3065151Oryza sativaSelaginella moellendorffii16.740.2984.3483forward
CNT3040082Oryza sativaMarchantia polymorpha30.3835.9580.13151forward

Expression of CNT30694759

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MATGKVVSGILLPRDELLRVEELTVRPSAHLVDD

Sequence

>CNT30694759
GTGAGTGAAGATATGATCTGTGAGATGAGCCTGTTCAAGTTGGTGTAGGTTGGCCTCTCGATGTCAAGGGATCTCCGGCATATGTCATAGATAGCCTCAT
TGTCTAGGAGAACTGCCACATCAGTGTGCTCAAGCAAGGAGTGGGTGGAGAGGACACTGTTGTATGGTTCTACAACAGCTTTATACCTGGGGGGAAGGGT
AAATTGTGAAGCCAAGCTTGGACTTCTTTCCATAATCAACAGAGAGACGCTCCAACAGAAGAGAACCAAGTCCTGATCCAGTTCCACCACCAACAGCATT
GAACACCAAGAATCCCTGCAGCCCAGTGCAGTTGTCTGCCAACTTGCGCACACGGTCCAGGCATAGATCTACGATCTCCTTTCCAACTGTGTAATGGCCA
CGGGCAAAGTTGTTAGCGGCATCCTCCTTCCCAGAGATGAGCTGCTCAGGGTGGAAGAGCTGACGGTACGACCCAGTGCGCACCTCGTCGATGACAG