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Detailed information on CNT3098615


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAF9|TBA4_GOSHI, E-value = 5e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Solanum tuberosumOryza sativa33.7224.7985.55173forward
CNT30677509Solanum tuberosumSetaria viridis59.6536.0885.29306forward
CNT30522101Solanum tuberosumSetaria italica46.222.3687.76237forward
CNT30533600Solanum tuberosumEucalyptus grandis52.0571.3985.39267forward
CNT30547493Solanum tuberosumIpomoea triloba48.9322.4586.45251forward
CNT30517711Solanum tuberosumJuglans regia24.9524.1587.5128forward
CNT30371538Solanum tuberosumArabidopsis thaliana41.3344.6387.26212forward
CNT30501067Solanum tuberosumCoffea canephora48.5434.4485.14249forward
CNT30618173Solanum tuberosumSesamum indicum39.5725.685.71203forward
CNT30729860Solanum tuberosumCorchorus capsularis52.6329.1986.67270forward
CNT3071007Solanum tuberosumQuercus suber52.8353.0383.76271forward
CNT30379228Solanum tuberosumManihot esculenta52.6330.9685.56270forward
CNT30507454Solanum tuberosumNicotiana attenuata67.2553.1692.17345forward
CNT30712730Solanum tuberosumGlycine max51.2751.3785.17263forward
CNT30177039Solanum tuberosumSecale cereale47.3717.8991.36243forward
CNT30295408Solanum tuberosumTriticum aestivum47.3739.1990.12243forward
CNT30223592Solanum tuberosumHordeum vulgare20.6627.1887.74106forward
CNT30391405Solanum tuberosumTriticum turgidum47.3732.0289.71243forward
CNT3085161Solanum tuberosumVigna radiata58.2842.6584.95299forward
CNT30555281Solanum tuberosumOryza glaberrima46.228.6282.7237forward
CNT30144688Solanum tuberosumMedicago truncatula26.3238.0387.41135forward
CNT30439881Solanum tuberosumAegilops tauschii47.3731.6889.71243forward
CNT30247794Solanum tuberosumAvena sativa59.6544.6785.95306forward
CNT30655883Solanum tuberosumTriticum dicoccoides47.3734.0390.53243forward
CNT3075301Solanum tuberosumBrassica juncea21.0520.3489.81108forward
CNT30265526Solanum tuberosumBrassica rapa51.0726.3885.11262forward
CNT30445643Solanum tuberosumSaccharum spontaneum52.0530.185.39267forward
CNT30136973Solanum tuberosumLolium perenne39.5748.3390.15203forward
CNT30953Solanum tuberosumZea mays52.0528.2284.27267forward
CNT3041219Solanum tuberosumChlamydomonas reinhardtii29.6326.6786.18152forward
CNT30219368Solanum tuberosumKalanchoe fedtschenkoi33.1429.1185.29170forward
CNT30208739Solanum tuberosumHelianthus annuus41.3353.6786.32212forward
CNT30689745Solanum tuberosumTriticum urartu39.5726.6491.63203forward
CNT30721298Solanum tuberosumTriticum spelta24.3738.4693.6125forward
CNT30361562Solanum tuberosumSorghum bicolor49.1225.4885.32252forward
CNT30597072Solanum tuberosumOryza meridionalis46.232.6483.12237forward
CNT30356256Solanum tuberosumLactuca sativa25.5425.2980.92131forward
CNT30371316Solanum tuberosumOryza glumipatula46.220.0882.7237forward
CNT30570163Solanum tuberosumVitis vinifera50.131.0484.44257forward
CNT3052700Solanum tuberosumAmborella trichopoda14.6223.7389.3375forward
CNT30106557Solanum tuberosumOryza longistaminata9.3622.4389.5848forward
CNT30119652Solanum tuberosumCitrus clementina40.9427.5680210forward
CNT30148523Solanum tuberosumBrachypodium distachyon34.8927.7585.47179forward
CNT30104256Solanum tuberosumOryza rufipogon46.218.2382.7237forward
CNT30575848Solanum tuberosumOryza barthii44.8325.5884.35230forward
CNT30582828Solanum tuberosumEchinochloa crusgalli46.227.6286.5237forward
CNT30117950Solanum tuberosumOryza nivara46.228.5982.7237forward
CNT30558847Solanum tuberosumPanicum hallii47.3732.9386.42243forward
CNT30726259Solanum tuberosumLupinus angustifolius52.6332.5786.3270forward

Expression of CNT3098615

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MYSISTRLLHRHHLHLPIQHQPPRNPFQEQQGRLQEPQ*

>peptide 2 (53 aa)
MVATAALTSFGTTSPRNMRQQAMYLPWRGSHLTIIEEGSNALFVISATESCSW*

Sequence

>CNT3098615
CAGAGATAAAAAGTAACAGTCAAACGAACATATTTTGATTTCCATAACAGCACAATTCAGTTTAGAAGACCACAACAAGTAATATTCATTGCTAGGAGTG
CAACAGAAATCCATCAAATAACAAACAACCAAGACAAACACATCACACACCACAATGTATTCAATCAGTACTCGTCTCCTTCATCGCCACCATCTTCATC
TTCCAATTCAGCACCAACCTCCTCGTAATCCTTTTCAAGAGCAGCAAGGTCGCCTCCAGGAACCACAGTAGGTGGTTGGTAGTTGATACCACACTTGAAA
CCAGTAGGACACCAGTCGACAAATTGGATAGTGCGCTTGGTCTTGATGGTGGCCACAGCAGCGTTGACATCCTTTGGCACAACATCACCACGGAACATGA
GACAGCAGGCCATGTACTTGCCATGGCGAGGGTCACACTTAACCATCATAGAAGAGGGTTCAAATGCGCTGTTTGTGATCTCTGCAACTGAGAGCTGCTC
GTGGTAAGCCTTC