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Detailed information on CNT30570163


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAF9|TBA4_GOSHI, E-value = 3e-110

BLAST vs NONCODE:
NONGMAT000219, E-value = 1e-63

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Vitis viniferaOryza sativa37.4444.4182.58310forward
CNT30677979Vitis viniferaSetaria viridis47.3441.3183.93392forward
CNT30522101Vitis viniferaSetaria italica47.3436.9884.44392forward
CNT30533600Vitis viniferaEucalyptus grandis39.8688.2483.94330forward
CNT30547493Vitis viniferaIpomoea triloba47.3435.0684.95392forward
CNT30371538Vitis viniferaArabidopsis thaliana38.0466.3287.3315forward
CNT30501067Vitis viniferaCoffea canephora36.1141.3684.95299forward
CNT30618173Vitis viniferaSesamum indicum33.0934.5586.5274forward
CNT30729860Vitis viniferaCorchorus capsularis53.7448.1188.09445forward
CNT3071007Vitis viniferaQuercus suber45.7774.1785.49379forward
CNT30379228Vitis viniferaManihot esculenta56.0453.2188.36464forward
CNT30507454Vitis viniferaNicotiana attenuata46.1458.8686.13382forward
CNT30709081Vitis viniferaGlycine max43.3647.7486.63359forward
CNT3098615Vitis viniferaSolanum tuberosum31.0450.184.44257forward
CNT30177039Vitis viniferaSecale cereale56.0434.1783.62464forward
CNT30283587Vitis viniferaTriticum aestivum37.843.7288.18313forward
CNT30382785Vitis viniferaTriticum turgidum37.841.1387.86313forward
CNT3085161Vitis viniferaVigna radiata37.243.9485.71308forward
CNT30555417Vitis viniferaOryza glaberrima54.2355.6480.62449forward
CNT30144688Vitis viniferaMedicago truncatula15.8236.993.13131forward
CNT30439881Vitis viniferaAegilops tauschii55.6860.183.3461forward
CNT30247895Vitis viniferaAvena sativa51.9357.3383.49430forward
CNT30655883Vitis viniferaTriticum dicoccoides47.3454.987.24392forward
CNT3075301Vitis viniferaBrassica juncea21.9834.2785.16182forward
CNT30445643Vitis viniferaSaccharum spontaneum55.9252.285.1463forward
CNT30136973Vitis viniferaLolium perenne29.3557.8687.65243forward
CNT30953Vitis viniferaZea mays55.6848.7384.16461forward
CNT3041219Vitis viniferaChlamydomonas reinhardtii26.4538.4281.74219forward
CNT30229012Vitis viniferaAnanas comosus26.3326.387.61218forward
CNT30219368Vitis viniferaKalanchoe fedtschenkoi27.7839.3885.22230forward
CNT30208739Vitis viniferaHelianthus annuus21.9846.0887.91182forward
CNT30689745Vitis viniferaTriticum urartu37.6840.9487.82312forward
CNT30720138Vitis viniferaTriticum spelta20.4149.1386.39169forward
CNT30362155Vitis viniferaSorghum bicolor47.3435.9384.18392forward
CNT30597072Vitis viniferaOryza meridionalis41.1846.9780.94341forward
CNT30360524Vitis viniferaLactuca sativa29.2337.7583.88242forward
CNT30371316Vitis viniferaOryza glumipatula54.2338.0580.62449forward
CNT3052700Vitis viniferaAmborella trichopoda18.4848.4286.93153forward
CNT30106557Vitis viniferaOryza longistaminata23.0789.2579.06191forward
CNT30119652Vitis viniferaCitrus clementina21.7423.6282.22180forward
CNT30148523Vitis viniferaBrachypodium distachyon28.9937.2180.83240forward
CNT30104256Vitis viniferaOryza rufipogon54.2334.5480.85449forward
CNT30575848Vitis viniferaOryza barthii41.1837.9381.52341forward
CNT30582828Vitis viniferaEchinochloa crusgalli55.6853.7384.16461forward
CNT30117950Vitis viniferaOryza nivara54.2354.1680.85449forward
CNT30593783Vitis viniferaEragrostis curvula22.5835.4281.28187forward
CNT30558847Vitis viniferaPanicum hallii42.2747.4382.86350forward
CNT30724701Vitis viniferaLupinus angustifolius5741.8187.71472forward

Expression of CNT30570163

Peptides detected in this lncRNA

>peptide 1 (57 aa)
PSQANVCPSIYDQTIPSQNHNSIRPDLSLFVIGTFFDKMSSGSDVFFILHSEGMHSC*

>peptide 2 (36 aa)
MCFLSFTVKVCILVNTHKQSALKHITISYYSMKIVF*

>peptide 3 (34 aa)
MRENTSATLVELEIMHTALCTLARSPPGTTVGGW*

Sequence

>CNT30570163
CCCAGCCAGGCCAATGTGTGTCCGTCCATATATGACCAAACCATACCAAGTCAAAATCATAACTCCATAAGACCTGACTTGTCCCTTTTTGTCATAGGAA
CATTCTTTGACAAGATGAGCAGTGGATCTGATGTGTTTTTTATCCTTCACAGTGAAGGTATGCATTCTTGTTAACACACATAAGCAAAGTGCATTAAAAC
ACATCACCATATCATATTATAGCATGAAGATAGTTTTTTAGTCGATCATTAATCGATTCAACATAGGCTCAAACATAAAAGATAATAGCACACTGATGAT
AGGAAGAACCTACCAAACAATGTCGAGTGCAGAAGAAATAGACATAGCAAAATAAAACATAAGATCAAACTTGTGGTCAATGCGGGAGAACACTTCTGCC
ACACTGGTAGAGTTGGAGATCATGCACACAGCCCTCTGCACCTTGGCAAGATCACCACCAGGAACAACAGTTGGAGGTTGGTAATTGATGCCACATTTGA
ATCCAGTAGGGCACCAATCAACAAACTGAATAGTGCGCTTAGTCTTGATAGTGGCAACAGCTGCATTCACATCCTTAGGAACAACATCACCTCGGTACAT
CAGGCAGCAGGCCATGTACTTGCCATGACGGGGGTCACACTTGGCCATCATAGAAGAGGGCTCAAAAGCACTGTTGGTAATTTCAGCTACTGAAAGTTGC
TCATGGTATGCCTTTTCAGCAGAAATCACAGGAGCATATGATGAAAGCATGAAGTGAATTCTAGGATACGGGACCAAATTGGTCTGGAATTCAGTCACAT
CCACATTCAATGCACCATCGAACCTCAG