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Detailed information on CNT30611949


BLAST search results

BLAST vs Swiss-Prot:
sp|P33629|TBA_PRUDU, E-value = 3e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Arabis alpinaOryza sativa63.5844.2780.91220forward
CNT30677977Arabis alpinaSetaria viridis34.122.3988.98118forward
CNT30317272Arabis alpinaCorylus avellana23.9921.3486.7583forward
CNT30547605Arabis alpinaIpomoea triloba32.3720.483.93112forward
CNT30517675Arabis alpinaJuglans regia33.2419.0487.83115forward
CNT30501067Arabis alpinaCoffea canephora44.821.4483.23155forward
CNT30729860Arabis alpinaCorchorus capsularis69.9426.1683.88242forward
CNT3071006Arabis alpinaQuercus suber26.5919.0585.8792forward
CNT30379324Arabis alpinaManihot esculenta34.112.2286.44118forward
CNT30403515Arabis alpinaBeta vulgaris33.2444.7589.57115forward
CNT30493173Arabis alpinaOlea europaea22.5418.8984.6278forward
CNT30709081Arabis alpinaGlycine max33.2415.2985.22115forward
CNT30283673Arabis alpinaTriticum aestivum33.2437.3489.57115forward
CNT30220716Arabis alpinaHordeum vulgare29.4844.7488.24102forward
CNT30383546Arabis alpinaTriticum turgidum31.2136.4989.81108forward
CNT30237104Arabis alpinaBrassica oleracea25.7227.4793.2689forward
CNT30555279Arabis alpinaOryza glaberrima34.3938.1488.24119forward
CNT30435344Arabis alpinaAegilops tauschii33.2436.9888.7115forward
CNT3059767Arabis alpinaArabidopsis lyrata22.2510.8693.5177forward
CNT3075316Arabis alpinaBrassica juncea30.9236.0388.79107forward
CNT30265527Arabis alpinaBrassica rapa34.119.1689.83118forward
CNT30445136Arabis alpinaSaccharum spontaneum28.0313.7887.6397forward
CNT30136247Arabis alpinaLolium perenne33.2437.5889.57115forward
CNT301078Arabis alpinaZea mays33.2441.9789.57115forward
CNT3041150Arabis alpinaChlamydomonas reinhardtii37.8628.7380.92131forward
CNT30609153Arabis alpinaGossypium raimondii68.558.5282.7237forward
CNT30210906Arabis alpinaHelianthus annuus23.1230.6586.2580forward
CNT30129276Arabis alpinaCorymbia citriodora35.2629.1985.25122forward
CNT30716286Arabis alpinaMalus domestica golden70.8118.7685.31245forward
CNT30683531Arabis alpinaTriticum urartu33.2437.4689.57115forward
CNT30721658Arabis alpinaTriticum spelta33.2427.7189.57115forward
CNT30619808Arabis alpinaCajanus cajan33.2419.3386.96115forward
CNT30597159Arabis alpinaOryza meridionalis34.3916.4490.76119forward
CNT30360524Arabis alpinaLactuca sativa20.5211.0890.1471forward
CNT30371253Arabis alpinaOryza glumipatula34.3938.7688.24119forward
CNT30704384Arabis alpinaPrunus avium27.4617.0683.1695forward
CNT3024757Arabis alpinaPopulus trichocarpa34.145.2184.75118forward
CNT30331462Arabis alpinaDioscorea rotundata43.3529.1882150forward
CNT30147962Arabis alpinaBrachypodium distachyon32.3733.0489.29112forward
CNT30104256Arabis alpinaOryza rufipogon34.399.1588.24119forward
CNT30575645Arabis alpinaOryza barthii34.113.9290.68118forward
CNT30579614Arabis alpinaEchinochloa crusgalli33.5329.3786.21116forward
CNT30496537Arabis alpinaDigitaria exilis34.3952.6582.35119forward
CNT30117847Arabis alpinaOryza nivara34.3912.788.24119forward
CNT30174517Arabis alpinaVigna angularis19.6533.8385.2968forward
CNT30724701Arabis alpinaLupinus angustifolius34.3910.5489.08119forward

Expression of CNT30611949

Peptides detected in this lncRNA

>peptide 1 (43 aa)
LRDKAIEVGVSRPLDAEGASTDVIDSFIVEEDGDQNQFLHQQR*

>peptide 2 (82 aa)
METRTSSSTNSVEDEETLETSAVVSELPDTVKTEINNLLPNGVMSTGEIVSCILFTADELLRVEKLTVSAGSDLVDDSGLKIN

Sequence

>CNT30611949
ACCTGAGAGACAAGGCGATTGAGGTTGGTGTAAGTAGGCCTCTCGATGCTGAGGGAGCGTCTACAGATGTCATAGATAGCTTCATTGTCGAGGAGGATGG
AGACCAGAACCAGTTCCTCCACCAACAGCGTTGAAGACGAGGAAACCTTGGAGACCAGTGCAGTTGTCAGCGAGCTTCCTGATACGGTCAAGACAGAGAT
CAACAATCTCCTTCCCAATGGTGTAATGTCCACGGGCGAAATTGTTAGCTGCATCCTCTTTACCGCTGATGAGTTGCTCAGGGTGGAAAAGCTGACGGTA
AGTGCCGGTTCTGACCTCGTCGATGACAGTGGGCTCAAGATCAACG