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Detailed information on CNT30106557


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000219, E-value = 8e-28

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Oryza longistaminataOryza sativa42.9913.1894.5792forward
CNT30677693Oryza longistaminataSetaria viridis93.9332.5291.04201forward
CNT30532757Oryza longistaminataEucalyptus grandis80.3739.0985.47172forward
CNT30547605Oryza longistaminataIpomoea triloba69.1626.9684.46148forward
CNT30377837Oryza longistaminataArabidopsis thaliana55.6130.1380.67119forward
CNT30501067Oryza longistaminataCoffea canephora68.2220.1983.56146forward
CNT30618173Oryza longistaminataSesamum indicum47.212.7486.14101forward
CNT3071007Oryza longistaminataQuercus suber55.6123.2981.51119forward
CNT30379228Oryza longistaminataManihot esculenta89.2521.981.68191forward
CNT30504800Oryza longistaminataNicotiana attenuata73.3635.5284.08157forward
CNT30709049Oryza longistaminataGlycine max90.6527.9982.47194forward
CNT3098615Oryza longistaminataSolanum tuberosum22.439.3689.5848forward
CNT30184570Oryza longistaminataSecale cereale83.6428.2392.74179forward
CNT30294619Oryza longistaminataTriticum aestivum68.2217.3493.84146forward
CNT30224654Oryza longistaminataHordeum vulgare49.536.9488.68106forward
CNT30391405Oryza longistaminataTriticum turgidum92.9926.2291.96199forward
CNT3085161Oryza longistaminataVigna radiata59.3518.1282.68127forward
CNT30555281Oryza longistaminataOryza glaberrima99.5325.7297.65213forward
CNT30144688Oryza longistaminataMedicago truncatula61.2136.983.21131forward
CNT30439881Oryza longistaminataAegilops tauschii92.9925.9591.96199forward
CNT30247794Oryza longistaminataAvena sativa90.6528.3288.66194forward
CNT30662251Oryza longistaminataTriticum dicoccoides92.9929.3592.46199forward
CNT30445136Oryza longistaminataSaccharum spontaneum92.9928.2790.45199forward
CNT30136973Oryza longistaminataLolium perenne57.0129.0590.98122forward
CNT30953Oryza longistaminataZea mays94.3921.3591.58202forward
CNT3041150Oryza longistaminataChlamydomonas reinhardtii68.6932.2485.03147forward
CNT30229012Oryza longistaminataAnanas comosus90.1923.2884.46193forward
CNT30217674Oryza longistaminataKalanchoe fedtschenkoi79.4447.6283.53170forward
CNT30204030Oryza longistaminataHelianthus annuus58.8830.3687.3126forward
CNT30684179Oryza longistaminataTriticum urartu92.9931.7491.96199forward
CNT30721351Oryza longistaminataTriticum spelta92.9930.0691.96199forward
CNT30340361Oryza longistaminataEragrostis tef81.3133.2793.1174forward
CNT30362155Oryza longistaminataSorghum bicolor61.6812.190.91132forward
CNT30597159Oryza longistaminataOryza meridionalis56.5416.7197.52121forward
CNT30360524Oryza longistaminataLactuca sativa58.4119.584125forward
CNT30371316Oryza longistaminataOryza glumipatula94.3917.1297.03202forward
CNT30570163Oryza longistaminataVitis vinifera89.2523.0779.06191forward
CNT3052700Oryza longistaminataAmborella trichopoda66.8245.2583.22143forward
CNT3024728Oryza longistaminataPopulus trichocarpa89.2523.5281.68191forward
CNT30119652Oryza longistaminataCitrus clementina34.119.5886.373forward
CNT30148523Oryza longistaminataBrachypodium distachyon61.2120.3190.84131forward
CNT30104256Oryza longistaminataOryza rufipogon99.5316.3897.18213forward
CNT30578254Oryza longistaminataOryza barthii85.9865.9597.83184forward
CNT30582828Oryza longistaminataEchinochloa crusgalli92.0622.9689.85197forward
CNT30117950Oryza longistaminataOryza nivara99.5325.6997.18213forward
CNT30558847Oryza longistaminataPanicum hallii92.9926.9689.45199forward
CNT30333509Oryza longistaminataCynara cardunculus48.618.9186.54104forward

Expression of CNT30106557

Peptides detected in this lncRNA

>peptide 1 (68 aa)
ALGHHGGWLEGAVGDLRDRELLVVGLLGRDHRGVGGKHEVDPRVGHKVGLELVDIHIQSTVEPQGGRQ*

Sequence

>CNT30106557
TCGCACTTGGCCATCATGGAGGATGGCTCGAAGGCGCTGTTGGTGATCTCCGCGACCGAGAGCTGCTCGTGGTAGGCCTTCTCGGCCGAGATCACCGGGG
CGTAGGAGGAAAGCATGAAGTGGATCCTCGGGTAGGGCACAAGGTTGGTCTGGAACTCGTTGACATCCACATTCAGAGCACCGTCGAACCTCAGGGAGGC
AGACAGTGAGGAGG