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Detailed information on CNT30533600


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAF9|TBA4_GOSHI, E-value = 1e-80

BLAST vs NONCODE:
NONGMAT000219, E-value = 3e-50

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Eucalyptus grandisOryza sativa67.6536.2589.72253forward
CNT30677979Eucalyptus grandisSetaria viridis84.2233.1989.52315forward
CNT30522101Eucalyptus grandisSetaria italica84.2229.7289.84315forward
CNT30547493Eucalyptus grandisIpomoea triloba87.1729.1690.18326forward
CNT30371538Eucalyptus grandisArabidopsis thaliana65.2451.3783.61244forward
CNT30501067Eucalyptus grandisCoffea canephora73.5338.0486.91275forward
CNT30618173Eucalyptus grandisSesamum indicum66.8431.5382.8250forward
CNT30729860Eucalyptus grandisCorchorus capsularis87.1735.2487.12326forward
CNT3071007Eucalyptus grandisQuercus suber87.1763.886.5326forward
CNT30379228Eucalyptus grandisManihot esculenta88.2437.8486.97330forward
CNT30507454Eucalyptus grandisNicotiana attenuata80.7546.5386.09302forward
CNT30712730Eucalyptus grandisGlycine max74.8754.6985.71280forward
CNT3098615Eucalyptus grandisSolanum tuberosum71.3952.0585.39267forward
CNT30177039Eucalyptus grandisSecale cereale88.2424.388.79330forward
CNT30294619Eucalyptus grandisTriticum aestivum88.2439.1989.7330forward
CNT30224141Eucalyptus grandisHordeum vulgare45.1924.8589.35169forward
CNT30391405Eucalyptus grandisTriticum turgidum88.2443.4889.7330forward
CNT3085161Eucalyptus grandisVigna radiata81.5543.5184.26305forward
CNT30555281Eucalyptus grandisOryza glaberrima88.2439.8687.88330forward
CNT30144688Eucalyptus grandisMedicago truncatula45.4547.8987.06170forward
CNT30439881Eucalyptus grandisAegilops tauschii87.4342.6389.3327forward
CNT30247895Eucalyptus grandisAvena sativa86.6343.288.27324forward
CNT30662251Eucalyptus grandisTriticum dicoccoides88.2448.6789.39330forward
CNT3075301Eucalyptus grandisBrassica juncea34.7624.4886.92130forward
CNT30265526Eucalyptus grandisBrassica rapa74.332886.69278forward
CNT30445643Eucalyptus grandisSaccharum spontaneum88.2437.286.36330forward
CNT30136973Eucalyptus grandisLolium perenne64.9757.8688.89243forward
CNT30953Eucalyptus grandisZea mays74.629.4989.61279forward
CNT3041219Eucalyptus grandisChlamydomonas reinhardtii47.8631.489.39179forward
CNT30219368Eucalyptus grandisKalanchoe fedtschenkoi57.4936.8287.91215forward
CNT30208739Eucalyptus grandisHelianthus annuus54.5551.6586.27204forward
CNT30689745Eucalyptus grandisTriticum urartu67.3833.0786.9252forward
CNT30721351Eucalyptus grandisTriticum spelta40.9123.1189.54153forward
CNT30362155Eucalyptus grandisSorghum bicolor75.9426.0388.38284forward
CNT30597072Eucalyptus grandisOryza meridionalis88.2445.4587.58330forward
CNT30360524Eucalyptus grandisLactuca sativa52.9430.8983.84198forward
CNT30371316Eucalyptus grandisOryza glumipatula88.2427.9787.58330forward
CNT30482824Eucalyptus grandisChara braunii25.412.4884.2195forward
CNT30570163Eucalyptus grandisVitis vinifera88.2439.8683.94330forward
CNT3052700Eucalyptus grandisAmborella trichopoda35.2941.7789.39132forward
CNT30119652Eucalyptus grandisCitrus clementina59.092980.54221forward
CNT30148523Eucalyptus grandisBrachypodium distachyon58.2933.888.53218forward
CNT30104256Eucalyptus grandisOryza rufipogon88.2425.3887.88330forward
CNT30575848Eucalyptus grandisOryza barthii76.4731.8188.46286forward
CNT30582828Eucalyptus grandisEchinochloa crusgalli75.9433.189.44284forward
CNT30117950Eucalyptus grandisOryza nivara88.2439.8187.88330forward
CNT30593783Eucalyptus grandisEragrostis curvula29.4120.8389.09110forward
CNT30558847Eucalyptus grandisPanicum hallii74.8737.9492.14280forward
CNT30726259Eucalyptus grandisLupinus angustifolius87.1739.3284.05326forward

Expression of CNT30533600

Peptides detected in this lncRNA

>peptide 1 (88 aa)
HSPLDLGEVASRDNCGRLVVDTALESGGAPVDELDGALGLDGCHSCVHVLGHHITTVHEAACHVFPMARVALGHHRGWLESTVGDLSH*

>peptide 2 (59 aa)
MVRLVLMVATAAFTSLGTTSPRYMRQHAMYFPWRGSHLAIIEDGSKALLVISATESCSW*

Sequence

>CNT30533600
CACACAGCCCTCTGGACCTTGGCGAGGTCGCCTCCAGGGACAACTGTGGGCGGCTGGTAGTTGATACCGCACTTGAATCCGGTGGGGCACCAGTCGACGA
ACTGGATGGTGCGCTTGGTCTTGATGGTTGCCACAGCTGCGTTCACGTCCTTGGGCACCACATCACCACGGTACATGAGGCAGCATGCCATGTATTTCCC
ATGGCGAGGGTCGCACTTGGCCATCATAGAGGATGGCTCGAAAGCACTGTTGGTGATCTCAGCCACTGAGAGCTGCTCATGGTAGGCCTTCTCAGCTGAG
ATGACAGGGGCATAGGATGAAAGCATGAAGGCACCATCAAACCTTAGAGAGGCAGTCAAGGAGGAAATGACCTG