Detailed information on CNT30555281


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 1e-106

BLAST vs NONCODE:
NONGMAT000219, E-value = 7e-47

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533600Oryza glaberrimaEucalyptus grandis39.8688.2487.88330forward
CNT30501067Oryza glaberrimaCoffea canephora37.242.681.49308forward
CNT30729860Oryza glaberrimaCorchorus capsularis49.154482.56407forward
CNT30507454Oryza glaberrimaNicotiana attenuata42.1553.7881.38349forward
CNT30712730Oryza glaberrimaGlycine max37.0859.9682.74307forward
CNT3098615Oryza glaberrimaSolanum tuberosum28.6246.282.7237forward
CNT3085161Oryza glaberrimaVigna radiata34.5440.882.17286forward
CNT30144688Oryza glaberrimaMedicago truncatula23.0753.882.2191forward
CNT3041219Oryza glaberrimaChlamydomonas reinhardtii26.0937.8992.13216forward
CNT30219368Oryza glaberrimaKalanchoe fedtschenkoi27.7839.3884.78230forward
CNT30208739Oryza glaberrimaHelianthus annuus24.6451.6585.78204forward
CNT30684179Oryza glaberrimaTriticum urartu31.7641.9591.63263forward
CNT30721351Oryza glaberrimaTriticum spelta30.6838.3791.73254forward
CNT30340361Oryza glaberrimaEragrostis tef21.3833.8494.92177forward
CNT30106557Oryza glaberrimaOryza longistaminata25.7299.5397.65213forward
CNT30119652Oryza glaberrimaCitrus clementina24.8827.0379.61206forward
CNT30148523Oryza glaberrimaBrachypodium distachyon29.2337.5290.91242forward
CNT30558847Oryza glaberrimaPanicum hallii46.9852.7191.26389forward

Expression of CNT30555281

Peptides detected in this lncRNA

>peptide 1 (47 aa)
IASKDSNALSSCFVLRQTTNLNIKDVTKKVHINNTRSQQLELQANPA*

>peptide 2 (73 aa)
MPHLNPVGHQSTNWMVRFVLMVATAAFTSLGTTSPRYIRQHAMYLPWRGSHLAIMEDGSKALLVISATESCSW*

Sequence

>CNT30555281
ATAGCATCAAAAGATTCTAATGCTTTAAGTAGTTGCTTCGTTTTAAGACAAACCACGAACTTGAATATTAAAGATGTCACAAAGAAGGTTCACATAAACA
ACACAAGGTCACAGCAGCTAGAGCTGCAAGCAAACCCGGCATAATCGAAAAGCAAATGTTCTTTCAAAAGCAGACACACAAACTGATAGATAGAAGCCCA
CACGGGCAGATCATAGGATAGCAGCAGTAATCAGGCACATTGCCAAGGCAGCAGGAACCCCTGAACCCTCTCTAGTACTCGTCACCCTCATCACCCTCGT
CACCATCGTCGAACTCGGAGCCGACCTCCTCGTAGTCCTTCTCCAGCGCGGCGAGGTCCTCAACACCTCGACGACGCTGGTGGAGTTGGAGATCATGCAC
ACGGCCCTCTGCACCTTGGCCAGGTCTCCCCCCGGGACGACGCTGGGCGGCTGGTAGTTGATGCCGCACTTGAACCCCGTGGGGCACCAGTCCACGAACT
GGATGGTGCGCTTCGTCTTGATGGTGGCCACCGCGGCGTTCACGTCCTTGGGGACCACGTCGCCGCGGTACATCAGGCAGCACGCCATGTACTTGCCGTG
GCGCGGGTCGCACTTGGCCATCATGGAGGACGGCTCGAAGGCGCTGTTGGTGATCTCCGCCACGGAGAGCTGCTCGTGGTAGGCCTTCTCGGCCGAGATC
ACCGGGGCGTAGGAGGAAAGCATGAAGTGGATCCTCGGGTAGGGCACCAGGTTGGTCTGGAACTCGTTGACATCCACATTCAGAGCACCGTCGAACCTCA
GGGAGGCAGTCAGTGAGGAGATGACCTG