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Detailed information on CNT3071006


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAG0|TBA2_GOSHI, E-value = 1e-49

BLAST vs NONCODE:
NONGMAT000220, E-value = 5e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Quercus suberOryza sativa56.9455.3381.82275forward
CNT30678671Quercus suberSetaria viridis62.1136.9982300forward
CNT30521842Quercus suberSetaria italica61.0831.9682.03295forward
CNT30640127Quercus suberNymphaea colorata63.3538.3584.97306forward
CNT30517675Quercus suberJuglans regia38.130.4681.52184forward
CNT30501067Quercus suberCoffea canephora61.741.2284.56298forward
CNT30403515Quercus suberBeta vulgaris26.2949.4283.46127forward
CNT30712809Quercus suberGlycine max60.4687.1681.85292forward
CNT30296175Quercus suberTriticum aestivum40.3766.7883.59195forward
CNT30220716Quercus suberHordeum vulgare19.6741.6783.1695forward
CNT30391993Quercus suberTriticum turgidum40.3781.9383.59195forward
CNT30237104Quercus suberBrassica oleracea31.8847.5379.87154forward
CNT30555279Quercus suberOryza glaberrima28.9944.8781.43140forward
CNT30435344Quercus suberAegilops tauschii33.3351.7783.85161forward
CNT3059767Quercus suberArabidopsis lyrata24.6416.7881.51119forward
CNT30611949Quercus suberArabis alpina19.0526.5985.8792forward
CNT30445136Quercus suberSaccharum spontaneum44.9330.8284.79217forward
CNT30136247Quercus suberLolium perenne33.1352.2983.12160forward
CNT3010240Quercus suberZea mays52.5927.0883.07254forward
CNT30606894Quercus suberGossypium raimondii62.9483.2985.86304forward
CNT30716299Quercus suberMalus domestica golden63.3550.4183.99306forward
CNT30689747Quercus suberTriticum urartu33.3352.4483.85161forward
CNT30721349Quercus suberTriticum spelta29.6147.6783.92143forward
CNT30619808Quercus suberCajanus cajan26.2921.3485.04127forward
CNT30596030Quercus suberOryza meridionalis31.6863.7583.01153forward
CNT30106559Quercus suberOryza longistaminata12.0125.8991.3858forward
CNT3024647Quercus suberPopulus trichocarpa60.8756.7681.29294forward
CNT30331462Quercus suberDioscorea rotundata39.5437.1682.72191forward
CNT30147962Quercus suberBrachypodium distachyon24.0234.2286.21116forward
CNT30174517Quercus suberVigna angularis25.8862.1983.2125forward
CNT30726253Quercus suberLupinus angustifolius61.982.1482.27299forward
CNT3065151Quercus suberSelaginella moellendorffii21.5350.4982.69104forward
CNT3040082Quercus suberMarchantia polymorpha57.5666.1979.86278forward

Expression of CNT3071006

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MWRPVAVEIGVSGALDVKGSPANVIDSLIVEKHGDISVLEEGMCRKDAVVRLYNGCGDLW*

>peptide 2 (64 aa)
LRDKAVEIGVSGALDVKGSPANVIDSLIVEKHGDISVLEEGMCRKDAVVRLYNGCGDLWRLRLV*

Sequence

>CNT3071006
ACCTGAGAGACAAGGCGGTTGAGATTGGTGTAAGTGGGGCGCTCGATGTCAAGGGATCGCCTGCAAATGTCATAGATAGCCTCATTGTCGAGAAGCACGG
CGACATCAGTGTGCTCGAGGAGGGAATGTGTCGAAAGGACGCTGTTGTAAGGCTCTACAACGGATGTGGAGACCTGTGGCGGTTGAGATTGGTGTAAGTG
GGGCGCTCGATGTCAAGGGATCGCCTGCAAATGTCATAGATAGCCTCATTGTCGAGAAGCACGGCGACATCAGTGTGCTCGAGGAGGGAATGTGTCGAAA
GGACGCTGTTGTAAGGCTCTACAACGGATGTGGAGACCTGTGGTGAGGGATAGACTGTGAAACCAAGCTTCGACTTTTTGCCGTAATCAACAGAGAGGCG
CTCCAAAAGTAGCGATCCAAGACCAGATCCGGTACCGCCACCAACAGCATTGAAAACCAAGAAACCTTGAAGACCGGTGCAGT