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Detailed information on CNT30371316


BLAST search results

BLAST vs Swiss-Prot:
sp|P20364|TBB1_DAUCA, E-value = 2e-43

BLAST vs NONCODE:
NONGMAT000220, E-value = 3e-74

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697150Oryza glumipatulaOryza sativa31.02100.2797.27366forward
CNT30677979Oryza glumipatulaSetaria viridis34.5842.9990.93408forward
CNT30640127Oryza glumipatulaNymphaea colorata43.964.9181.66518forward
CNT30533600Oryza glumipatulaEucalyptus grandis27.9788.2487.58330forward
CNT30547493Oryza glumipatulaIpomoea triloba34.0735.9684.83402forward
CNT30517675Oryza glumipatulaJuglans regia18.1435.4382.71214forward
CNT30501067Oryza glumipatulaCoffea canephora25.8542.1981.31305forward
CNT30727923Oryza glumipatulaCorchorus capsularis27.227.1184.74321forward
CNT3071007Oryza glumipatulaQuercus suber32.0373.9781.48378forward
CNT30379228Oryza glumipatulaManihot esculenta38.4752.0682.16454forward
CNT30403515Oryza glumipatulaBeta vulgaris17.9782.4983.96212forward
CNT30507454Oryza glumipatulaNicotiana attenuata29.5853.7881.38349forward
CNT30712809Oryza glumipatulaGlycine max27.6397.3185.28326forward
CNT3098615Oryza glumipatulaSolanum tuberosum20.0846.282.7237forward
CNT30184570Oryza glumipatulaSecale cereale38.4771.6190.97454forward
CNT30294619Oryza glumipatulaTriticum aestivum35.5949.8890.71420forward
CNT30391405Oryza glumipatulaTriticum turgidum40.5162.9890.79478forward
CNT3085161Oryza glumipatulaVigna radiata24.2440.881.82286forward
CNT30555417Oryza glumipatulaOryza glaberrima63.2292.4497.05746forward
CNT30439881Oryza glumipatulaAegilops tauschii40.5162.3289.96478forward
CNT30247895Oryza glumipatulaAvena sativa3555.0790.07413forward
CNT30662251Oryza glumipatulaTriticum dicoccoides40.5170.591478forward
CNT3075301Oryza glumipatulaBrassica juncea24.8355.1885.32293forward
CNT30265526Oryza glumipatulaBrassica rapa23.928.484.4282forward
CNT30446538Oryza glumipatulaSaccharum spontaneum40.1760.7790.3474forward
CNT30136973Oryza glumipatulaLolium perenne20.5957.8687.24243forward
CNT30953Oryza glumipatulaZea mays40.5150.5389.33478forward
CNT30606894Oryza glumipatulaGossypium raimondii27.1287.6783.12320forward
CNT30219368Oryza glumipatulaKalanchoe fedtschenkoi19.4939.3884.78230forward
CNT30655223Oryza glumipatulaRosa chinensis15.1770.4785.47179forward
CNT30208739Oryza glumipatulaHelianthus annuus17.2951.6585.78204forward
CNT30716286Oryza glumipatulaMalus domestica golden27.6324.9685.28326forward
CNT30684179Oryza glumipatulaTriticum urartu21.139.7191.97249forward
CNT30721351Oryza glumipatulaTriticum spelta20.3436.2592.08240forward
CNT30340361Oryza glumipatulaEragrostis tef1533.8494.92177forward
CNT30362155Oryza glumipatulaSorghum bicolor33.6436.3989.17397forward
CNT30597072Oryza glumipatulaOryza meridionalis29.0747.2598.54343forward
CNT30360524Oryza glumipatulaLactuca sativa27.6350.8682.82326forward
CNT30570163Oryza glumipatulaVitis vinifera38.0554.2380.62449forward
CNT30106557Oryza glumipatulaOryza longistaminata17.1294.3997.03202forward
CNT3024647Oryza glumipatulaPopulus trichocarpa27.261.9781.93321forward
CNT30148523Oryza glumipatulaBrachypodium distachyon20.5137.5290.91242forward
CNT30104015Oryza glumipatulaOryza rufipogon62.9761.5198.52743forward
CNT30578286Oryza glumipatulaOryza barthii51.8663.7596.57612forward
CNT30582828Oryza glumipatulaEchinochloa crusgalli40.4255.5988.68477forward
CNT30117869Oryza glumipatulaOryza nivara49.0797.4799.65579forward
CNT30174517Oryza glumipatulaVigna angularis15.1789.0584.36179forward
CNT30558847Oryza glumipatulaPanicum hallii31.6950.6891.44374forward
CNT30724701Oryza glumipatulaLupinus angustifolius38.0539.7781.51449forward
CNT3040082Oryza glumipatulaMarchantia polymorpha25.3471.1982.61299forward

Expression of CNT30371316

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MASLSSRTATSVCSRREWVERTLLYGSTTEVET*

>peptide 2 (36 aa)
MSMRENTSTTLVELEIMHTALCTLARSPPGTTLGGW*

>peptide 3 (73 aa)
MPHLNPVGHQSTNWMVRFVLMVATAAFTSLGTTSPRYIRQHAMYLPWRGSHLAIMEDGSKALLVISATESCSW*

>peptide 4 (77 aa)
IRYPKEVSRQLKVTQLFSSIKKISMPLTLRQTTNLDTKDATKKVHINNTGHSSERYKQTRHNRKANVVLKADTQTDR*

Sequence

>CNT30371316
TAATCAGATATCCAAAAGAAGTTTCACGCCAATTAAAGGTCACACAATTATTCTCTAGCATAAAAAAGATTTCAATGCCATTGACTTTAAGACAAACGAC
GAACTTGGATACTAAAGATGCCACAAAGAAGGTTCACATAAACAACACAGGTCACAGCAGCGAAAGGTACAAGCAAACCCGGCATAATCGAAAAGCAAAT
GTTGTTTTAAAAGCAGACACACAAACTGATAGATAGAAGCCCACACGGGCAGATCATAGGATAGCAGCAGTAATCAAGCATTGCCAAGGCACCAGGCAAG
AACCCTGAACCCTCTCTAGTACTCGTCACCCTCATCACCCTCGTCACCATCGTCGAACTTGATGTCGATGCGGGAGAACACCTCGACGACGCTGGTGGAG
TTGGAGATCATGCACACGGCCCTCTGCACCTTGGCCAGGTCTCCCCCCGGGACGACGCTGGGCGGCTGGTAGTTGATGCCGCACTTGAACCCCGTGGGGC
ACCAGTCCACGAACTGGATGGTGCGCTTCGTCTTGATGGTGGCCACCGCGGCGTTCACGTCCTTGGGGACCACGTCGCCGCGGTACATCAGGCAGCACGC
CATGTACTTGCCGTGGCGCGGGTCGCACTTGGCCATCATGGAGGACGGCTCGAAGGCGCTGTTGGTGATCTCCGCCACGGAGAGCTGCTCGTGGTAGGCC
TTCTCGGCCGAGATCACCGGGGCGTAGGAGGACAGCATGAAGTGGATCCTCGGGTAGGGCACCAGGTTGGTCTGGAACTCGTTGACATCCACATTCAGAG
CACCATCGAACCTCAGGGAGGCAGTCAGGCAGTACCTGGGACACAAGCCTATTGAGGTTGGTGTAGGTTGGGCGCTCAATGTCGAGGGAGCGGCGGCAGA
TGTCATAGATGGCCTCATTGTCGAGCAGGACAGCGACATCGGTGTGCTCAAGGAGGGAGTGGGTGGAGAGGACACTGTTGTATGGCTCAACCACAGAGGT
GGAGACCTGAGGGGACGGGTACACGGTGAACCCGAGCTTGGACTTCTTGCCATAGTCCACAGAGAGACGCTCAAGGAGAAGGGAACCGAGACCGGAGCCC
GTTCCTCCTCCAACAGCGTTGAACACAAGGAAGCCCTGGAGACCAGTGCAGTTGTCGGCAAGCTTCCTGATGCGGTCAAG