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Detailed information on CNT30331462


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FT36|TBA_DAUCA, E-value = 1e-86

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Dioscorea rotundataOryza sativa19.6520.3283.17101forward
CNT30677947Dioscorea rotundataSetaria viridis42.4132.7883.03218forward
CNT30640127Dioscorea rotundataNymphaea colorata33.6621.6883.24173forward
CNT30317272Dioscorea rotundataCorylus avellana39.351.9381.68202forward
CNT30372848Dioscorea rotundataArabidopsis thaliana23.1519.8387.39119forward
CNT30501067Dioscorea rotundataCoffea canephora37.1626.4281.68191forward
CNT30727923Dioscorea rotundataCorchorus capsularis35.9915.6284.32185forward
CNT3071006Dioscorea rotundataQuercus suber37.1639.5482.72191forward
CNT30712809Dioscorea rotundataGlycine max37.7457.9182.99194forward
CNT30294619Dioscorea rotundataTriticum aestivum34.2420.985.23176forward
CNT30391993Dioscorea rotundataTriticum turgidum37.7481.5184.02194forward
CNT30562914Dioscorea rotundataActinidia chinensis39.6967.1180.39204forward
CNT30555279Dioscorea rotundataOryza glaberrima21.435.2683.64110forward
CNT30435344Dioscorea rotundataAegilops tauschii24.941.1685.16128forward
CNT3075301Dioscorea rotundataBrassica juncea34.8233.7184.36179forward
CNT30611949Dioscorea rotundataArabis alpina29.1843.3582150forward
CNT30445136Dioscorea rotundataSaccharum spontaneum37.7427.5681.96194forward
CNT30135921Dioscorea rotundataLolium perenne38.3352.3981.22197forward
CNT309322Dioscorea rotundataZea mays30.1658.0585.16155forward
CNT3041150Dioscorea rotundataChlamydomonas reinhardtii20.8223.4686.92107forward
CNT30609153Dioscorea rotundataGossypium raimondii43.7755.5682.67225forward
CNT30648424Dioscorea rotundataRosa chinensis40.4764.881.25208forward
CNT30129276Dioscorea rotundataCorymbia citriodora35.4143.5482.42182forward
CNT30716286Dioscorea rotundataMalus domestica golden55.6421.980.77286forward
CNT30683531Dioscorea rotundataTriticum urartu24.941.6985.94128forward
CNT30721349Dioscorea rotundataTriticum spelta24.942.6785.94128forward
CNT30362155Dioscorea rotundataSorghum bicolor39.4918.6184.24203forward
CNT30619808Dioscorea rotundataCajanus cajan21.618.6685.59111forward
CNT30596030Dioscorea rotundataOryza meridionalis24.3252.0884125forward
CNT30359416Dioscorea rotundataLactuca sativa43.1931.0586.49222forward
CNT3052700Dioscorea rotundataAmborella trichopoda23.3537.9783.33120forward
CNT30106559Dioscorea rotundataOryza longistaminata13.0429.9186.5767forward
CNT3024647Dioscorea rotundataPopulus trichocarpa35.9935.7183.24185forward
CNT30147962Dioscorea rotundataBrachypodium distachyon19.6529.7987.13101forward
CNT30575645Dioscorea rotundataOryza barthii34.2420.7583.52176forward
CNT30579614Dioscorea rotundataEchinochloa crusgalli31.9141.5282.32164forward
CNT30174517Dioscorea rotundataVigna angularis23.1559.284.03119forward
CNT30726253Dioscorea rotundataLupinus angustifolius35.9950.8282.7185forward
CNT3040082Dioscorea rotundataMarchantia polymorpha35.9944.0579.46185forward

Expression of CNT30331462

Peptides detected in this lncRNA

>peptide 1 (31 aa)
VRWAINVKRTSANVVDGFIVKEHGDISVFKK*

>peptide 2 (54 aa)
TLGDQCQENVGKCRRWLHCQGARRHQCVQEVSGWKARCCKVQQRRWKPEEKGRQ*

Sequence

>CNT30331462
GTACGTTGGGCGATCAATGTCAAGAGAACGTCGGCAAATGTCGTAGATGGCTTCATTGTCAAGGAGCACGGCGACATCAGTGTGTTCAAGAAGTGAGTGG
GTGGAAAGCACGCTGTTGTAAGGTTCAACAACGGAGGTGGAAACCTGAGGAGAAGGGTAGACAGTGAAACCCAGCTTGGATTTTTTCCCATAATCAACTG
ATAGACGTTCTAGAAGGAGAGAACCGAGTGCAGTTGTCGGCGAGCTTGCGGATGCGGTCGAGGCAGAGATCGACGATTTCTTTGCCAATGGTGTAGTGGC
CGCGAGCGAAGTTATTGGCGGCATCTTCTTTGCCACTGATGAGTTGTTCAGGATGAAAGAGCTGACGGTAGGTGCCAGTGCGGACTTCGTCAATCACAGT
TGGTTCTAGATCGACGAAGATTGCACGTGGGACGTGCTTTCCGGCACCGGTTTCACTGAAGAAGGTGTTGAATGCGTCGTCACCTCCGCCGACTGTTTTG
TCACTTGGCATTCG