Detailed information on CNT30117881


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 2e-103

BLAST vs NONCODE:
NONGMAT000219, E-value = 6e-35

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678108Oryza nivaraSetaria viridis63.1260.1388.83546forward
CNT30501067Oryza nivaraCoffea canephora50.1760.0381.57434forward
CNT3079816Oryza nivaraBrassica juncea26.8284.3687.07232forward
CNT3052700Oryza nivaraAmborella trichopoda32.8389.8780.99284forward
CNT30575645Oryza nivaraOryza barthii47.7548.790.31413forward
CNT30174517Oryza nivaraVigna angularis14.9164.1886.05129forward
CNT3040082Oryza nivaraMarchantia polymorpha15.6132.1484.44135forward

Expression of CNT30117881

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MASLSSKTATSVCSRREWVERTLLYGSRSTKTARGTCFPAPVSLKKVLKASSPPPTVLS

>peptide 2 (73 aa)
MPHLNPVGHQSTNWMVRFVLMVATAAFTSLGTTSPRYIRQHAMYLPWRGSHLAIMEDGSKALLVISATESCSW*

>peptide 3 (57 aa)
RQTTHLDIKDATKKVHINNTGHSSESYKQTLHNRKANVFQNQTHKLIDRSPHGQIIG*

Sequence

>CNT30117881
CGACAAACCACTCACTTGGATATTAAAGATGCCACAAAGAAGGTTCACATAAACAACACAGGTCACAGCAGCGAAAGCTACAAGCAAACCCTGCATAATC
GAAAAGCAAATGTTTTTCAAAACCAGACACACAAACTGATAGATAGAAGCCCACACGGACAGATCATAGGATAGCAGCAGTAATCAAGCATTGCCAAGGC
ACCAGGCAAGAACCCTGAACCTCTCTAGTACTCGTCACCCTCATCACCCTCGTCACCATCGTCGAACTCGGAGCCGACCTCCTCGTAGTCCTTCTCCAGC
GCGGCGAGGTCTCCCCCCGGGACGACGCTGGGCGGCTGGTAGTTGATGCCGCACTTGAACCCCGTGGGGCACCAGTCCACGAACTGGATGGTGCGCTTCG
TCTTGATGGTGGCCACCGCGGCGTTCACGTCCTTGGGGACCACGTCGCCGCGGTACATCAGGCAGCACGCCATGTACTTGCCGTGGCGCGGGTCGCACTT
GGCCATCATGGAGGACGGCTCGAAGGCGCTGTTGGTGATCTCCGCCACGGAGAGCTGCTCGTGGTAGGCCTTCTCGGCCGAGATCACCGGGGCGTAGGAG
GAAAGCATGAAGTGGATCCTCGGGTAGGGCACCAGGTTGGTGTAGGTTGGGCGCTCAATGTCGAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGT
CGAGCAAGACAGCGACATCGGTGTGCTCAAGGAGGGAGTGGGTGGAGAGGACACTGTTGTATGGCTCAAGATCGACGAAGACAGCACGGGGGACATGCTT
CCCAGCACCAGTCTCACTGAAGAAGGTGTTAAAAGCATCATCACCTCCCCCAACGGTCTTGTCAC