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Detailed information on CNT30689745


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRB7|TBA_WHEAT, E-value = 2e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Triticum urartuOryza sativa57.2262.4683.94436forward
CNT30677760Triticum urartuSetaria viridis63.2553.1490.04482forward
CNT30522101Triticum urartuSetaria italica63.2545.4790.25482forward
CNT30640127Triticum urartuNymphaea colorata35.8334.2187.55273forward
CNT30533600Triticum urartuEucalyptus grandis33.0767.3886.9252forward
CNT30547493Triticum urartuIpomoea triloba57.6139.2787.02439forward
CNT30517711Triticum urartuJuglans regia28.0840.3888.32214forward
CNT30702815Triticum urartuQuercus lobata21.5244.5786.59164forward
CNT30371538Triticum urartuArabidopsis thaliana54.286.9587.41413forward
CNT30501067Triticum urartuCoffea canephora26.928.3587.32205forward
CNT30618173Triticum urartuSesamum indicum53.0250.9584.9404forward
CNT30727923Triticum urartuCorchorus capsularis60.138.6888.43458forward
CNT3071007Triticum urartuQuercus suber37.9356.5683.74289forward
CNT30379228Triticum urartuManihot esculenta57.3550.1188.33437forward
CNT30507454Triticum urartuNicotiana attenuata30.1835.4490230forward
CNT30712730Triticum urartuGlycine max67.0699.883.37511forward
CNT3098615Triticum urartuSolanum tuberosum26.6439.5791.63203forward
CNT30177039Triticum urartuSecale cereale81.6345.895.66622forward
CNT30284381Triticum urartuTriticum aestivum91.9991.7598701forward
CNT30224141Triticum urartuHordeum vulgare42.3947.589.78323forward
CNT30382785Triticum urartuTriticum turgidum60.2460.3297.82459forward
CNT3086234Triticum urartuVigna radiata36.6152.6486.74279forward
CNT30555352Triticum urartuOryza glaberrima82.5569.5885.69629forward
CNT30435101Triticum urartuAegilops tauschii40.1699.0397.71306forward
CNT30247087Triticum urartuAvena sativa77.4380.691.69590forward
CNT30655738Triticum urartuTriticum dicoccoides91.21103.2794.82695forward
CNT3059767Triticum urartuArabidopsis lyrata30.3132.5885.28231forward
CNT3075301Triticum urartuBrassica juncea24.2834.8487.57185forward
CNT30265526Triticum urartuBrassica rapa54.241.5987.41413forward
CNT30445643Triticum urartuSaccharum spontaneum63.2554.3491.08482forward
CNT30136973Triticum urartuLolium perenne49.7490.2494.2379forward
CNT30953Triticum urartuZea mays54.8644.1989418forward
CNT3041219Triticum urartuChlamydomonas reinhardtii28.7438.4286.76219forward
CNT30229012Triticum urartuAnanas comosus31.128.5987.34237forward
CNT30219368Triticum urartuKalanchoe fedtschenkoi30.1839.3886.52230forward
CNT30208739Triticum urartuHelianthus annuus40.9478.9985.58312forward
CNT30720142Triticum urartuTriticum spelta22.4447.7798.25171forward
CNT30361562Triticum urartuSorghum bicolor62.3448.0390.11475forward
CNT30597072Triticum urartuOryza meridionalis34.2535.9586.21261forward
CNT30371350Triticum urartuOryza glumipatula57.3553.2985.81437forward
CNT30482824Triticum urartuChara braunii38.7138.7681.69295forward
CNT30430260Triticum urartuPapaver somniferum28.4837.2987.1217forward
CNT30570163Triticum urartuVitis vinifera40.9437.6887.82312forward
CNT3024728Triticum urartuPopulus trichocarpa35.8333.6287.91273forward
CNT30119652Triticum urartuCitrus clementina24.1524.1582.07184forward
CNT30103952Triticum urartuOryza rufipogon82.5567.7185.85629forward
CNT30578324Triticum urartuOryza barthii43.3133.686.36330forward
CNT30582828Triticum urartuEchinochloa crusgalli63.2556.1890.04482forward
CNT30593783Triticum urartuEragrostis curvula25.3336.5586.01193forward
CNT30333509Triticum urartuCynara cardunculus19.9527.6486.18152forward
CNT30724701Triticum urartuLupinus angustifolius57.6138.8887.93439forward

Expression of CNT30689745

Peptides detected in this lncRNA

>peptide 1 (48 aa)
RYKGLTTQQVVKQTPQSKDSNRQITDKATRADHGIAAARLGKAPGGRL*

>peptide 2 (56 aa)
MPSPTYQWTKARLAYMRSNLWSMREKTSTTLVELEIMHTALWTLARSPPGTTPGGW*

>peptide 3 (53 aa)
MVATAALTSLGTTSPRYMRQQAMYLPWRGSHLAIIDEGSKALLLRSLGHRRKA*

Sequence

>CNT30689745
AAAGATACAAGGGTCTTACAACACAACAGGTTGTAAAACAAACACCACAAAGCAAAGATTCAAACAGACAGATAACAGATAAAGCCACTCGGGCAGATCA
TGGGATAGCAGCAGCACGCCTTGGGAAAGCACCAGGAGGCAGGCTCTAGTACTCGTCGCCCTCGTCACCATCCTCACCCTCGTCGAACTCAGCACCAACT
TCTTCATAGTCCTTCTCCAGGGCAGCAAGATCCTCACGGGCCTCAGAGAACTCTCCCTCCTCCATGCCCTCACCCACGTACCAGTGGACGAAGGCACGCT
TGGCGTACATGAGGTCAAACTTGTGGTCAATGCGGGAGAAGACCTCGACGACACTGGTGGAGTTGGAGATCATGCACACAGCCCTCTGGACCTTGGCAAG
GTCACCGCCTGGGACAACACCTGGTGGCTGGTAGTTGATACCACACTTGAAGCCAGTGGGGCACCAGTCAACAAACTGGATAGTGCGCTTGGTCTTGATG
GTGGCCACAGCAGCGTTGACATCCTTGGGAACAACATCACCACGGTACATGAGACAGCAGGCCATGTACTTGCCGTGGCGGGGGTCACACTTGGCCATCA
TAGATGAAGGCTCAAAGGCGCTGTTGCTGAGATCACTGGGGCATAGGAGGAAAGCATGAAGTGGATCCTCGGGTAGGGCACCAAGTTGGTCTGGAATTCA
TTGACATCAACATTCAGAGCACCATCAAACCTCAGGGAAGCTGTCAGCGATGAAATGACCTG