Detailed information on CNT30359250


BLAST search results

BLAST vs Swiss-Prot:
sp|P46263|TBB1_SOLTU, E-value = 1e-15

BLAST vs NONCODE:
NONGMAT000219, E-value = 4e-20

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547615Lactuca sativaIpomoea triloba48.9754.1581.98333forward
CNT30501067Lactuca sativaCoffea canephora54.5651.3178.98371forward
CNT30177336Lactuca sativaSecale cereale61.3236.3980.58417forward
CNT30144688Lactuca sativaMedicago truncatula26.3250.4284.36179forward
CNT30655883Lactuca sativaTriticum dicoccoides28.6827.3185.13195forward
CNT30606894Lactuca sativaGossypium raimondii19.2635.8982.44131forward
CNT30229012Lactuca sativaAnanas comosus21.3217.4985.52145forward
CNT30684179Lactuca sativaTriticum urartu21.7623.685.14148forward
CNT30721351Lactuca sativaTriticum spelta21.7622.3685.14148forward
CNT30575645Lactuca sativaOryza barthii48.6839.0380.06331forward
CNT30558847Lactuca sativaPanicum hallii28.0925.8881.68191forward

Expression of CNT30359250

Peptides detected in this lncRNA

>peptide 1 (30 aa)
KITLKYVITSKLLRHNTPKQNKFKSPPYKE*

Sequence

>CNT30359250
AGAAGATCACATTAAAGTACGTCATTACATCAAAACTACTAAGGCACAACACCCCAAAACAAAACAAGTTCAAATCACCACCATATAAAGAGTAGTAAAG
TCACTCGCGACAGAAAACATACAATCACACCAACTAACAAACACTCAATACTCCTCACCTTCATCACCTTCATCGTCCCCTCCTTCAGCACCAACCTCCT
CATAATCCTTCGGAACCACATCCCCTCGGTACATCAAACAACACGCCATATACTTCCCATGCCTCGGATCACACTTCGCCATCATAGAAGAAGGCTCAAA
CGCACTGTTGGTTATCTCAGCAACTGACAACTGTTCATGGTAAGCCTTTTCAGCTGAAATCACAGGAGCGTAGGAGGAAAGCATGAAGTGAATCCTCGGA
TATGGAACTAGGTTGGCCGTTCGATGTCTAGTGACCGGCGGCAGATGTCGTAGATGGCTTCGTTGTCAAGAAGAATCGCGACGTCGGTGTGTTCTAGAAG
GGAGTGGGTTGATAAGACGCTGTTGTAGGGCTCGACTACTGATGTTGAGACTTGGGGAGATGGGTAGACTGTGAACCCGAGTTTTGACTTTTTTCCATAG
TCAACGGAGAGGCGTTCGAGTAGGAGAGAGCCTAGACCGGAGCCGGTGCCGCCGCCTACGGCGTTGAAGACTAGGAAGCC