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Detailed information on CNT30294619


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 2e-144

BLAST vs NONCODE:
NONGMAT000220, E-value = 3e-49

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678108Triticum aestivumSetaria viridis59.1454.8592.57498forward
CNT30522101Triticum aestivumSetaria italica74.4759.1589.15627forward
CNT30533600Triticum aestivumEucalyptus grandis39.1988.2489.7330forward
CNT30547493Triticum aestivumIpomoea triloba70.4353.0487.52593forward
CNT30501067Triticum aestivumCoffea canephora54.3963.3585.81458forward
CNT30729860Triticum aestivumCorchorus capsularis52.6147.8985.78443forward
CNT3071007Triticum aestivumQuercus suber44.8973.9782.54378forward
CNT30507454Triticum aestivumNicotiana attenuata34.0944.2288.85287forward
CNT30709081Triticum aestivumGlycine max69.9578.3284.04589forward
CNT30177336Triticum aestivumSecale cereale74.5854.894.75628forward
CNT30391405Triticum aestivumTriticum turgidum57.2463.599.38482forward
CNT3085161Triticum aestivumVigna radiata33.9740.885.66286forward
CNT30555384Triticum aestivumOryza glaberrima50.1249.3691422forward
CNT30144688Triticum aestivumMedicago truncatula24.1157.1886.7203forward
CNT30247895Triticum aestivumAvena sativa50.1256.2791.47422forward
CNT30662251Triticum aestivumTriticum dicoccoides57.2471.0999.79482forward
CNT30362155Triticum aestivumSorghum bicolor71.7355.3688.91604forward
CNT30597072Triticum aestivumOryza meridionalis40.7447.2590.38343forward
CNT30360524Triticum aestivumLactuca sativa24.1131.6783.74203forward
CNT30371316Triticum aestivumOryza glumipatula49.8835.5990.71420forward
CNT3052700Triticum aestivumAmborella trichopoda37.0598.7382.37312forward
CNT30106557Triticum aestivumOryza longistaminata17.3468.2293.84146forward
CNT30331462Triticum aestivumDioscorea rotundata20.934.2485.23176forward
CNT30148523Triticum aestivumBrachypodium distachyon28.7437.5288.02242forward
CNT30575645Triticum aestivumOryza barthii54.1653.7789.91456forward
CNT30117821Triticum aestivumOryza nivara62.3547.3491.24525forward
CNT30558847Triticum aestivumPanicum hallii39.945.5391.67336forward

Expression of CNT30294619

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MAGVTLGHHGGRLEGAVGDLSDRELLMVSLLS*

>peptide 2 (30 aa)
MGVGKRDNMHIDQGAKQVQTYHRFIQHNRL*

>peptide 3 (54 aa)
MLGAQCQGSGGRCHRWPHCQGGQPHQCAQGESGWTGHCCMAQQQRWRPEGMGTL*

>peptide 4 (59 aa)
MVRFVLMVATAALTSLGTTSPRYMRQQAMYLPWRGSHLAIMEEGSKALLVISATESCSW*

>peptide 5 (33 aa)
MASLSRRTATSVCSRREWVDRTLLYGSTTEVET*

>peptide 6 (34 aa)
MREKTSTTLVELEIMHTALWTLARSPPGTTLGGW*

Sequence

>CNT30294619
CAGATACTGAAACAGGGAAATGGTGATGGACAGCAGCAGAGGCTATGGGTGTAGGCAAACGAGATAACATGCATATTGACCAAGGTGCGAAGCAGGTTCA
AACATACCACAGGTTCATACAACACAACAGGTTGTAAACCAAACACCACACAGCAAACATTCAAACAGGCAGACAACAGATAAAGCCGCTTGGGCAGATC
ACAGGATAGTAGTAGACGAAGGCACGCTTGACGTACATCAGGTCGAACTTGTGGTCGATGCGGGAGAAGACCTCGACAACGCTGGTGGAGTTGGAGATCA
TGCACACGGCCCTCTGGACCTTGGCGAGGTCGCCGCCTGGGACGACGCTGGGTGGCTGGTAGTTGATACCACACTTGAAACCAGTGGGGCACCAGTCCAC
AAACTGGATGGTGCGCTTCGTCTTGATGGTGGCCACAGCAGCGTTGACATCCTTGGGCACAACATCACCACGGTACATGAGGCAGCAGGCCATGTACTTG
CCATGGCGGGGGTCACACTTGGCCATCATGGAGGAAGGCTCGAAGGCGCTGTTGGTGATCTCAGCGACAGAGAGCTGCTCATGGTAAGCCTTCTCAGCTG
AGATCACTGGGGCGTAGGAGGAAAGCATGAAGTGGATCCTCGGGTAGGGCACCAGGTTGGTGTATGTTGGGCGCTCAATGTCAAGGGAGCGGCGGCAGAT
GTCATAGATGGCCTCATTGTCAAGGAGGACAGCCACATCAGTGTGCTCAAGGAGAGAGTGGGTGGACAGGACACTGTTGTATGGCTCAACAACAGAGGTG
GAGACCTGAGGGGATGGGTACACTGTGAACCCAAGCTTGGAC