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Detailed information on CNT30220716


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRB7|TBA_WHEAT, E-value = 3e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Hordeum vulgareOryza sativa43.8620.1287100forward
CNT30677947Hordeum vulgareSetaria viridis60.0920.691.97137forward
CNT30547605Hordeum vulgareIpomoea triloba83.7734.7986.39191forward
CNT30517675Hordeum vulgareJuglans regia51.7519.5483.9118forward
CNT30501067Hordeum vulgareCoffea canephora42.9813.5586.7398forward
CNT3071006Hordeum vulgareQuercus suber41.6719.6783.1695forward
CNT30403515Hordeum vulgareBeta vulgaris60.0953.3186.13137forward
CNT30712809Hordeum vulgareGlycine max43.4229.5586.8799forward
CNT30283673Hordeum vulgareTriticum aestivum10074.0395.61228forward
CNT30383371Hordeum vulgareTriticum turgidum10076.2595.61228forward
CNT30237104Hordeum vulgareBrassica oleracea47.3733.3387.04108forward
CNT30555279Hordeum vulgareOryza glaberrima57.8942.3190.91132forward
CNT30435344Hordeum vulgareAegilops tauschii10073.3194.74228forward
CNT3075316Hordeum vulgareBrassica juncea59.2145.4585.93135forward
CNT30611949Hordeum vulgareArabis alpina44.7429.4888.24102forward
CNT30445136Hordeum vulgareSaccharum spontaneum60.5319.686.96138forward
CNT30136247Hordeum vulgareLolium perenne10074.5191.23228forward
CNT30228Hordeum vulgareZea mays60.0918.2989.78137forward
CNT30606894Hordeum vulgareGossypium raimondii42.9826.8585.7198forward
CNT30655223Hordeum vulgareRosa chinensis42.9838.5883.6798forward
CNT30716286Hordeum vulgareMalus domestica golden43.867.6687100forward
CNT30689747Hordeum vulgareTriticum urartu10074.2795.61228forward
CNT30721349Hordeum vulgareTriticum spelta1007693.86228forward
CNT30619808Hordeum vulgareCajanus cajan59.6522.8686.76136forward
CNT30360524Hordeum vulgareLactuca sativa44.7415.9183.33102forward
CNT30371253Hordeum vulgareOryza glumipatula10074.2792.11228forward
CNT30106559Hordeum vulgareOryza longistaminata29.3929.9194.0367forward
CNT3024757Hordeum vulgarePopulus trichocarpa60.0952.4983.21137forward
CNT30331419Hordeum vulgareDioscorea rotundata38.1630.9685.0687forward
CNT30147962Hordeum vulgareBrachypodium distachyon60.0940.4189.05137forward
CNT30117847Hordeum vulgareOryza nivara59.2114.4191.11135forward
CNT30174517Hordeum vulgareVigna angularis40.3545.7785.8792forward
CNT30726253Hordeum vulgareLupinus angustifolius27.6317.3195.2463forward
CNT3040082Hordeum vulgareMarchantia polymorpha27.1914.7687.162forward

Expression of CNT30220716

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MASLSSRIETSVCSRREWVDRTLLYGSTTERRSRRREPRPEPVPPPTALKTRKPWRPVQLSDSFLIRSRHRST

>peptide 2 (35 aa)
VIDGLIVKQDRDIGVLKEGVGGQDTVVWLNNRETL*

Sequence

>CNT30220716
ATGTCATAGATGGCCTCATTGTCAAGCAGGATAGAGACATCGGTGTGCTCAAGGAGGGAGTGGGTGGACAGGACACTGTTGTATGGCTCAACAACAGAGA
GACGCTCTAGGAGAAGAGAACCAAGGCCAGAGCCAGTTCCACCTCCAACAGCATTGAAGACAAGGAAGCCCTGGAGACCAGTGCAGTTGTCGGACAGCTT
CCTGATACGGTCAAGGCACAGATCAACA