« Back to Aegilops tauschii search


Detailed information on CNT30439881


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 9e-119

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Aegilops tauschiiOryza sativa40.9444.9990.45314forward
CNT30677979Aegilops tauschiiSetaria viridis58.154790.58446forward
CNT30522101Aegilops tauschiiSetaria italica56.7141.0490.8435forward
CNT30640127Aegilops tauschiiNymphaea colorata25.1624.1986.53193forward
CNT30533600Aegilops tauschiiEucalyptus grandis42.6387.4389.3327forward
CNT30547493Aegilops tauschiiIpomoea triloba58.0239.887.42445forward
CNT30517711Aegilops tauschiiJuglans regia15.5122.4588.24119forward
CNT30371538Aegilops tauschiiArabidopsis thaliana40.9466.1186.31314forward
CNT30501067Aegilops tauschiiCoffea canephora40.5543.0284.89311forward
CNT30618173Aegilops tauschiiSesamum indicum34.5533.4286.04265forward
CNT30729860Aegilops tauschiiCorchorus capsularis61.2850.8186.17470forward
CNT3071007Aegilops tauschiiQuercus suber50.5975.9382.99388forward
CNT30379228Aegilops tauschiiManihot esculenta64.4156.6586.44494forward
CNT30507454Aegilops tauschiiNicotiana attenuata49.858.8686.65382forward
CNT30712730Aegilops tauschiiGlycine max47.3370.984.85363forward
CNT3098615Aegilops tauschiiSolanum tuberosum31.6847.3789.71243forward
CNT30184570Aegilops tauschiiSecale cereale60.6373.3496.99465forward
CNT30297012Aegilops tauschiiTriticum aestivum71.0610099.82545forward
CNT30224141Aegilops tauschiiHordeum vulgare34.1638.5388.93262forward
CNT30391405Aegilops tauschiiTriticum turgidum88.489.3392.77678forward
CNT3085161Aegilops tauschiiVigna radiata37.0340.5185.56284forward
CNT30555384Aegilops tauschiiOryza glaberrima62.4556.0289.98479forward
CNT30144688Aegilops tauschiiMedicago truncatula26.4757.1886.21203forward
CNT30247895Aegilops tauschiiAvena sativa55.857.0792.06428forward
CNT30662251Aegilops tauschiiTriticum dicoccoides87.7499.2692.72673forward
CNT3075301Aegilops tauschiiBrassica juncea24.5135.485.64188forward
CNT30265526Aegilops tauschiiBrassica rapa46.5435.9585.99357forward
CNT30445643Aegilops tauschiiSaccharum spontaneum66.6257.6190.22511forward
CNT30953Aegilops tauschiiZea mays66.6254.0289.63511forward
CNT3041219Aegilops tauschiiChlamydomonas reinhardtii28.5538.4288.58219forward
CNT30229012Aegilops tauschiiAnanas comosus28.4226.387.61218forward
CNT30219368Aegilops tauschiiKalanchoe fedtschenkoi29.9939.3886.52230forward
CNT30208739Aegilops tauschiiHelianthus annuus26.9952.4187.92207forward
CNT30721351Aegilops tauschiiTriticum spelta31.6836.7197.53243forward
CNT30340361Aegilops tauschiiEragrostis tef23.0833.8490.96177forward
CNT30362155Aegilops tauschiiSorghum bicolor53.7237.7689.08412forward
CNT30597072Aegilops tauschiiOryza meridionalis44.7247.2589.5343forward
CNT30360524Aegilops tauschiiLactuca sativa32.3338.6981.05248forward
CNT30371316Aegilops tauschiiOryza glumipatula62.3240.5189.96478forward
CNT30482824Aegilops tauschiiChara braunii29.8630.0982.53229forward
CNT30570163Aegilops tauschiiVitis vinifera60.155.6883.3461forward
CNT3052700Aegilops tauschiiAmborella trichopoda20.2149.0584.52155forward
CNT30106557Aegilops tauschiiOryza longistaminata25.9592.9991.96199forward
CNT3024728Aegilops tauschiiPopulus trichocarpa25.9524.5185.93199forward
CNT30119652Aegilops tauschiiCitrus clementina28.9429.1381.08222forward
CNT30148523Aegilops tauschiiBrachypodium distachyon31.5537.5289.26242forward
CNT30104125Aegilops tauschiiOryza rufipogon65.5838.0889.86503forward
CNT30575848Aegilops tauschiiOryza barthii44.9838.3889.86345forward
CNT30582828Aegilops tauschiiEchinochloa crusgalli66.6259.5690.22511forward
CNT30117950Aegilops tauschiiOryza nivara64.4159.5990.08494forward
CNT30593783Aegilops tauschiiEragrostis curvula25.2936.7487.63194forward
CNT30558847Aegilops tauschiiPanicum hallii52.0254.0791.48399forward
CNT30333509Aegilops tauschiiCynara cardunculus16.9523.6483.85130forward
CNT30724701Aegilops tauschiiLupinus angustifolius63.6243.2285.25488forward

Expression of CNT30439881

Peptides detected in this lncRNA

>peptide 1 (45 aa)
PCSIDQGGTTKKQYKGGDHPGDDTNQITPRNNTDTETGKWCRQTR*

>peptide 2 (34 aa)
MREKTSTTLVELEIMQTALWTLARSPPGTTLGGW*

>peptide 3 (59 aa)
MVRFVLMVATAALTSLGTTSPRYMRQQAMYLPWRGSHLAIMEDGSKALLVISATESCSW*

Sequence

>CNT30439881
ACCCTTGCAGCATAGATCAGGGAGGCACAACGAAGAAACAATATAAAGGAGGGGATCATCCAGGCGACGACACCAACCAAATCACCCCAAGGAACAATAC
AGATACTGAAACAGGGAAATGGTGTAGGCAAACCAGATAACATGCATATTGACCAAGGTGCGAAGCAGGTTCAAACATACCACAGGTTGTAAACCAAACA
CCACACAGCAAACATTCAAACAGACAGACAGCAGATAAAGCCACTCGGGCAGATCACACGAAGGAACGCTTGGCGTACATCAGGTCGAACTTGTGGTCAA
TGCGGGAGAAGACCTCGACAACGCTGGTGGAGTTGGAGATCATGCAGACAGCCCTCTGGACCTTGGCAAGGTCACCGCCTGGGACGACGCTGGGTGGCTG
GTAGTTGATACCACACTTGAAACCAGTGGGGCACCAGTCCACAAACTGGATGGTGCGCTTCGTCTTGATGGTGGCCACAGCGGCGTTGACATCCTTGGGC
ACAACATCACCACGGTACATGAGACAGCAGGCCATGTACTTGCCGTGGCGGGGGTCACACTTGGCCATCATGGAGGATGGCTCGAAGGCGCTGTTGGTGA
TCTCAGCGACAGAGAGCTGCTCATGGTAAGCCTTCTCAGCTGAGATGACTGGGGCGTAGGAGGAAAGCATGAAGTGGATCCTTGGGTAGGGCACCAGGTT
GGTCTGGAATTCGTTCACATCAACATTCAGAGCACCATCAAACCTCAGGGAAGCAGTCAGGGATGAG