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Detailed information on CNT30362155


BLAST search results

BLAST vs Swiss-Prot:
sp|O22347|TBA1_ELEIN, E-value = 3e-140

BLAST vs NONCODE:
NONGMAT000220, E-value = 1e-85

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678108Sorghum bicolorSetaria viridis70.2184.3688.51766forward
CNT30522101Sorghum bicolorSetaria italica67.0969.0692.9732forward
CNT30640127Sorghum bicolorNymphaea colorata27.9638.2285.9305forward
CNT30533600Sorghum bicolorEucalyptus grandis26.0375.9488.38284forward
CNT30547493Sorghum bicolorIpomoea triloba66.1864.5882.55722forward
CNT30517675Sorghum bicolorJuglans regia22.2740.2383.54243forward
CNT30501067Sorghum bicolorCoffea canephora27.541.4984.67300forward
CNT3071007Sorghum bicolorQuercus suber34.6573.9783.07378forward
CNT30403515Sorghum bicolorBeta vulgaris18.6178.9986.7203forward
CNT30507454Sorghum bicolorNicotiana attenuata26.3144.2286.41287forward
CNT30712809Sorghum bicolorGlycine max27.6890.1586.75302forward
CNT30177336Sorghum bicolorSecale cereale69.265.8887.02755forward
CNT30294619Sorghum bicolorTriticum aestivum55.3671.7388.91604forward
CNT30391405Sorghum bicolorTriticum turgidum37.7654.2889.81412forward
CNT3085161Sorghum bicolorVigna radiata28.9645.0883.86316forward
CNT30555384Sorghum bicolorOryza glaberrima45.2857.7888.26494forward
CNT30439881Sorghum bicolorAegilops tauschii37.7653.7289.08412forward
CNT30247895Sorghum bicolorAvena sativa40.8859.4790.13446forward
CNT30662251Sorghum bicolorTriticum dicoccoides37.7660.7790.05412forward
CNT3075301Sorghum bicolorBrassica juncea25.1151.684.31274forward
CNT3010240Sorghum bicolorZea mays36.6642.6494400forward
CNT30606894Sorghum bicolorGossypium raimondii29.3387.6785.62320forward
CNT30716286Sorghum bicolorMalus domestica golden26.5822.2187.24290forward
CNT30371316Sorghum bicolorOryza glumipatula36.3933.6489.17397forward
CNT30570163Sorghum bicolorVitis vinifera35.9347.3484.18392forward
CNT30106557Sorghum bicolorOryza longistaminata12.161.6890.91132forward
CNT3024647Sorghum bicolorPopulus trichocarpa26.8656.5682.59293forward
CNT30331462Sorghum bicolorDioscorea rotundata18.6139.4984.24203forward
CNT30148523Sorghum bicolorBrachypodium distachyon21.1735.8189.18231forward
CNT30104256Sorghum bicolorOryza rufipogon45.283888.26494forward
CNT30575645Sorghum bicolorOryza barthii5570.7589.5600forward
CNT30117896Sorghum bicolorOryza nivara47.1160.5490.47514forward
CNT30593783Sorghum bicolorEragrostis curvula20.9943.3790.83229forward
CNT30558847Sorghum bicolorPanicum hallii29.7944.0491.08325forward

Expression of CNT30362155

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MPHLKPVGHQSTNWMVRLVLMVATAAFTSLGTTSPRYMRQQAMYLPWRGSHLAIMEDGSKALLVISATDSCSW*

>peptide 2 (50 aa)
MKWILGLGAQCQGSGGRCHRWPHCQGGQRHQCARGESGWTGHCCMAQPLR*

>peptide 3 (44 aa)
MRSRHRSTNTARGTCFPAPVSLKKVLKASSPPPTVLSPGIWPSA*

>peptide 4 (60 aa)
MARITFGHHGGWLKGTIGDFSNGQLLVVGLLSRDHRSVGGKHEVDPRVGRSMSRERRQMS*

>peptide 5 (57 aa)
MLPSASLTEEGVESIITSPNGLVTRHLAISLNRIQTAVLFMQIAKGDHIIQMQSIKMY

>peptide 6 (34 aa)
MRENTSTTLVELEIMHTARCTFARSPPGTTLGGW*

>peptide 7 (33 aa)
MASLSRRTATSVCSRREWVDRTLLYGSTTEVET*

Sequence

>CNT30362155
GACAAACAAGATAGTACGAGCCACTCAGGGCAGATCACGGGATAATTGCAGCAAATAGGCCCGACGCTGTAGAACCAGAAAGCTTCTAGTACTCGTCGCC
CTCGTCACCATCCTCACCCTCGTCGTACTCAGCGCCAACCTCCTCATAGTCCTTCTCAAGCGCAGCCAGGTCAAACTTGTGGTCGATGCGGGAGAACACC
TCCACAACGCTGGTGGAGTTGGAGATCATGCACACGGCACGCTGCACCTTTGCGAGGTCACCGCCGGGCACCACACTGGGTGGCTGGTAGTTGATGCCAC
ACTTGAAGCCAGTCGGGCACCAGTCCACGAACTGGATGGTGCGCTTGGTCTTGATGGTGGCCACAGCGGCATTCACATCCTTGGGGACCACGTCACCACG
GTACATGAGGCAGCAGGCCATGTACTTGCCATGGCGAGGATCACATTTGGCCATCATGGAGGATGGCTCAAAGGCACTATTGGTGATTTCAGCAACGGAC
AGCTGCTCGTGGTAGGCCTTCTCAGCCGAGATCACAGGAGCGTAGGAGGAAAGCATGAAGTGGATCCTCGGGTTGGGCGCTCAATGTCAAGGGAGCGGCG
GCAGATGTCATAGATGGCCTCATTGTCAAGGAGGACAGCGACATCAGTGTGCTCGAGGAGAGAGTGGGTGGACAGGACACTGTTGTATGGCTCAACCACT
GAGGTAGAGACCTGAGGGGATGGGTACACAGTGAACCCAAGCTTGGACTTCTTGCCATAATCAACAGACAGACGCTCCAAGAGGAGGGAACCAAGTCCAG
AGCCCGTTCCTCCACCAACAGCATTGAAGACAAGGAAACCCTGGAGACCAGTGCAGTTGTCTGCAAGCTTCCTGATGCGATCAAGGCACAGGTCAACAAA
CACAGCACGGGGGACATGCTTCCCAGCGCCAGTCTCACTGAAGAAGGTGTTGAAAGCATCATCACCTCCCCCAACGGTCTTGTCACCAGGCATCTGGCCA
TCAGCCTGAATAGAATACAAACAGCAGTGTTATTTATGCAAATTGCAAAAGGAGACCATATAATTCAAATGCAGTCGATTAAAATGTATCA