Detailed information on CNT30678108


BLAST search results

BLAST vs Swiss-Prot:
sp|O22347|TBA1_ELEIN, E-value = 7e-154

BLAST vs NONCODE:
NONGMAT000220, E-value = 2e-71

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522101Setaria viridisSetaria italica70.9360.7596.27644forward
CNT30640127Setaria viridisNymphaea colorata34.9139.7285.17317forward
CNT30547493Setaria viridisIpomoea triloba66.9654.3886.84608forward
CNT30501067Setaria viridisCoffea canephora68.2885.7584.03620forward
CNT30709081Setaria viridisGlycine max68.6182.8582.83623forward
CNT30177336Setaria viridisSecale cereale68.8354.5491.2625forward
CNT30294619Setaria viridisTriticum aestivum54.8559.1492.57498forward
CNT30362155Setaria viridisSorghum bicolor84.3670.2188.51766forward
CNT3052700Setaria viridisAmborella trichopoda34.810081.65316forward
CNT30575645Setaria viridisOryza barthii66.370.9990.03602forward
CNT30117881Setaria viridisOryza nivara60.1363.1288.83546forward

Expression of CNT30678108

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLPSTSLTEEGVESIITSSNGLVAGHLAISL

>peptide 2 (39 aa)
MAGVALGHHGGRLKGAVGDLCNRQLLMVGLLGRDDWCIG*

>peptide 3 (48 aa)
MASLSSRTATSVCSRREWVDRTLLYGSTTEVETWGDGYTVNPSLDFLP*

>peptide 4 (40 aa)
MRSTKTARGTCFPAPVSLKKVLKASSPPPTVLSPGIWPSA*

>peptide 5 (73 aa)
MPHLNPVGHQSTNWMVRLVLMVATAALTSLGTTSPRYMRQQAMYLPWRGSHLAIMEDGSKALLVISATDSCSW*

Sequence

>CNT30678108
ATAGGAGCCACTCGGGCAGATCATAGGATAACCGCGGCACACAGGCCTGACACAGCAGCAGGAAGCATCGTCTAGTACTCGTCACCCTCGTCTCCTTCCT
CGCCCTCGTCGAACTCAGCGCCGACCTCCTCGTAGTCCTTCTCGAGCGCAGCCAGGCACCACGCTGGGGGGCTGGTAGTTGATGCCGCACTTGAACCCAG
TGGGGCACCAGTCCACGAACTGGATGGTGCGCTTGGTCTTGATGGTGGCAACAGCAGCGTTGACGTCCTTGGGCACCACATCACCACGGTACATGAGGCA
GCAAGCCATGTACTTGCCATGGCGGGGGTCGCACTTGGCCATCATGGAGGACGGCTCAAAGGCGCTGTTGGTGATCTCTGCAACAGACAGCTGCTCATGG
TAGGCCTTCTCGGCAGAGATGACTGGTGCATAGGATGAAAGCATGAAGTGGATCCTCGGGTAGGGCACCAAGTTGGTGTAGGTGGGGCGCTCAATGTCAA
GGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGTCAAGCAGAACAGCAACATCAGTGTGCTCGAGGAGGGAGTGGGTGGACAGGACACTGTTGTATGG
CTCAACCACTGAGGTGGAGACCTGGGGAGATGGGTACACAGTGAACCCGAGCTTGGACTTCTTGCCATAGTCAACAGACAGACGCTCAAGGAGGAGAGAA
CCAAGACCAGAGCCTGTTCCTCCACCAACAGCATTGAAGACAAGGAAGCCCTGGAGACCAGTGCAGTTGTCGGCAAGCTTCCTGATGCGGTCAACAAAAA
CAGCACGGGGCACATGCTTCCCAGCACCAGTCTCACTGAAGAAGGTGTTGAAAGCATCATCACCTCCTCCAACGGTCTTGTCGCCGGGCATCTGGCCATC
AGCCTGAA