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Detailed information on CNT30144688


BLAST search results

BLAST vs Swiss-Prot:
sp|P46259|TBA1_PEA, E-value = 1e-62

BLAST vs NONCODE:
NONGMAT000219, E-value = 2e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677979Medicago truncatulaSetaria viridis56.3421.0787200forward
CNT30533600Medicago truncatulaEucalyptus grandis47.8945.4587.06170forward
CNT30547605Medicago truncatulaIpomoea triloba52.1133.786.49185forward
CNT30501067Medicago truncatulaCoffea canephora52.962686.7188forward
CNT30618173Medicago truncatulaSesamum indicum38.8717.486.23138forward
CNT30729860Medicago truncatulaCorchorus capsularis48.7318.791.33173forward
CNT3071007Medicago truncatulaQuercus suber50.4235.0386.59179forward
CNT30507454Medicago truncatulaNicotiana attenuata51.5528.285.79183forward
CNT30709081Medicago truncatulaGlycine max39.4418.6290.71140forward
CNT3098615Medicago truncatulaSolanum tuberosum38.0326.3287.41135forward
CNT30177039Medicago truncatulaSecale cereale57.1814.9587.19203forward
CNT30294619Medicago truncatulaTriticum aestivum57.1824.1186.7203forward
CNT30223592Medicago truncatulaHordeum vulgare25.9223.5986.9692forward
CNT30391405Medicago truncatulaTriticum turgidum57.1826.7586.7203forward
CNT3085161Medicago truncatulaVigna radiata51.2725.9690.11182forward
CNT30555281Medicago truncatulaOryza glaberrima53.823.0782.2191forward
CNT30439881Medicago truncatulaAegilops tauschii57.1826.4786.21203forward
CNT30247895Medicago truncatulaAvena sativa56.3426.6784.5200forward
CNT30655883Medicago truncatulaTriticum dicoccoides55.7727.7387.88198forward
CNT3075301Medicago truncatulaBrassica juncea41.6927.8787.16148forward
CNT30445643Medicago truncatulaSaccharum spontaneum55.4922.2184.77197forward
CNT30136973Medicago truncatulaLolium perenne27.0422.8687.596forward
CNT30953Medicago truncatulaZea mays56.3421.1485200forward
CNT30217674Medicago truncatulaKalanchoe fedtschenkoi33.5233.3384.87119forward
CNT30208739Medicago truncatulaHelianthus annuus27.8925.0687.8899forward
CNT30684179Medicago truncatulaTriticum urartu55.7731.5886.36198forward
CNT30721351Medicago truncatulaTriticum spelta48.7326.1387.28173forward
CNT30340361Medicago truncatulaEragrostis tef27.6118.7486.7398forward
CNT30597072Medicago truncatulaOryza meridionalis46.7622.8782.53166forward
CNT30359250Medicago truncatulaLactuca sativa50.4226.3284.36179forward
CNT30570163Medicago truncatulaVitis vinifera36.915.8293.13131forward
CNT3052700Medicago truncatulaAmborella trichopoda41.1346.288.36146forward
CNT30106557Medicago truncatulaOryza longistaminata36.961.2183.21131forward
CNT30119652Medicago truncatulaCitrus clementina22.5410.586.2580forward
CNT30148523Medicago truncatulaBrachypodium distachyon44.5124.582.91158forward
CNT30100634Medicago truncatulaOryza rufipogon44.5145.485.44158forward
CNT30575645Medicago truncatulaOryza barthii44.5118.6384.18158forward
CNT30117950Medicago truncatulaOryza nivara53.823.0482.2191forward
CNT30558847Medicago truncatulaPanicum hallii56.3427.187200forward

Expression of CNT30144688

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MARVTLSHHGRRFKSTVGDLSNRKLLMVSLLSRDNRCI*

>peptide 2 (32 aa)
ENTSATLVELEIMHTALCTLARSPPGTTVGGW*

>peptide 3 (92 aa)
GKHLSNTGRVRDHAHGPLHLGKITTRNNSRRLVIDTTLEPSWTPINKLNGTTSPRYIKQQAMYFPWRGSHLAIMEEGSKALLVISATESCSW*

Sequence

>CNT30144688
TGGAAAACACCTCAGCAACACTGGTAGAGTTAGAGATCATGCACACGGCCCTCTGCACCTTGGCAAGATCACCACCAGGAACAACAGTAGGAGGCTGGTA
ATTGATACCACACTTGAACCCAGTTGGACACCAATCAACAAACTGAATGGTACAACATCACCACGGTACATCAAACAACAAGCCATGTATTTTCCATGGC
GAGGGTCACACTTAGCCATCATGGAAGAAGGTTCAAAAGCACTGTTGGTGATCTCAGCAACAGAAAGCTGCTCATGGTAAGCCTTCTCAGCAGAGATAAC
AGGTGCATATGAGGAAAGCATGAAATGGATCCTAGGGTAAGGAACCAAGTTGGTT