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Detailed information on CNT3085161


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAF9|TBA4_GOSHI, E-value = 5e-72

BLAST vs NONCODE:
NONGMAT000219, E-value = 5e-41

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Vigna radiataOryza sativa28.128.2283.76197forward
CNT30677979Vigna radiataSetaria viridis40.830.1484.27286forward
CNT30522101Vigna radiataSetaria italica40.826.9884.62286forward
CNT30533600Vigna radiataEucalyptus grandis43.5181.5584.26305forward
CNT30547493Vigna radiataIpomoea triloba45.2228.3585.8317forward
CNT30501067Vigna radiataCoffea canephora42.9441.6385.71301forward
CNT30618173Vigna radiataSesamum indicum32.3828.6385.46227forward
CNT30729860Vigna radiataCorchorus capsularis45.2234.2786.44317forward
CNT3071007Vigna radiataQuercus suber45.3662.2386.16318forward
CNT30507454Vigna radiataNicotiana attenuata49.9353.9384.57350forward
CNT30712730Vigna radiataGlycine max33.6746.0987.29236forward
CNT3098615Vigna radiataSolanum tuberosum42.6558.2884.95299forward
CNT30177039Vigna radiataSecale cereale40.5120.9186.27284forward
CNT30294619Vigna radiataTriticum aestivum40.833.9785.66286forward
CNT30391405Vigna radiataTriticum turgidum40.837.6885.66286forward
CNT30555281Vigna radiataOryza glaberrima40.834.5482.17286forward
CNT30144688Vigna radiataMedicago truncatula25.9651.2790.11182forward
CNT30439881Vigna radiataAegilops tauschii40.5137.0385.56284forward
CNT30247794Vigna radiataAvena sativa50.7851.9782.87356forward
CNT30265526Vigna radiataBrassica rapa36.825.9885.66258forward
CNT30445643Vigna radiataSaccharum spontaneum45.0835.6383.86316forward
CNT30136973Vigna radiataLolium perenne32.8154.7686.09230forward
CNT30953Vigna radiataZea mays45.0833.483.23316forward
CNT30208739Vigna radiataHelianthus annuus28.149.8786.29197forward
CNT30721298Vigna radiataTriticum spelta16.1234.7790.27113forward
CNT30362155Vigna radiataSorghum bicolor45.0828.9683.86316forward
CNT30597072Vigna radiataOryza meridionalis39.9438.5782.14280forward
CNT30356256Vigna radiataLactuca sativa29.8140.3584.21209forward
CNT30371316Vigna radiataOryza glumipatula40.824.2481.82286forward
CNT30570163Vigna radiataVitis vinifera43.9437.285.71308forward
CNT3052700Vigna radiataAmborella trichopoda19.5443.3586.86137forward
CNT30106557Vigna radiataOryza longistaminata18.1259.3582.68127forward
CNT30148523Vigna radiataBrachypodium distachyon32.134.8881.33225forward
CNT30104256Vigna radiataOryza rufipogon40.82282.17286forward
CNT30575645Vigna radiataOryza barthii37.6631.1382.58264forward
CNT30582828Vigna radiataEchinochloa crusgalli40.5133.185.21284forward
CNT30117950Vigna radiataOryza nivara40.834.582.17286forward
CNT30558847Vigna radiataPanicum hallii40.5138.4884.51284forward
CNT30724701Vigna radiataLupinus angustifolius44.7927.8185.99314forward

Expression of CNT3085161

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MVLLVLMVATAAFTSFGTTSPLYIKQHAMYFPCRGSHLAIMEDGSKALFVISATESCSWYAFSAEITGA*

>peptide 2 (45 aa)
MPRVTLGHHGGWFKSTVCNLSNGKLLMVCFLSRDNRGIRRKHEMDP

Sequence

>CNT3085161
TTTCAATAGTTTATTTCCATATTCTTTTTGTTTGAATACATTATATTTCATATAATTTTAATTATGAGTTGTCCATTAAAATTGATAATTTAATATTTTA
AGTATTTTTGTTTTCAATTTGAGATCCCAAATAAATAAGGCTTTGCCACCTGAAGACACCTTGTCTTTCCTTAATTTTTGAAACATTACCAACTATTCAT
ATTGATATTTGATAACAAGCAAACATTGAAAAATCTCAACACACAGAGAAAACGAAATAGTTAACATGAAACACATGATGATATCAGACAGATATTCCAG
ATTCTAATATTCCTCATCTCCGTCAACATCTTCTCCATCGCCAGACTCAGCGCCAACCTCCTCGTAATCTTTCTCAAGAGCAGCAAGGTCACCTCCGGGA
ACAACAGTTGGAGGTTGGTAATTGATACCACACTTGAACCCAGTGGGGCACCAATCCACAAACTGGATGGTTCTCTTGGTCTTGATGGTCGCCACTGCAG
CATTCACATCCTTCGGCACAACATCACCCCTGTACATCAAACAACACGCCATGTACTTCCCATGCCGAGGGTCACACTTGGCCATCATGGAGGATGGTTC
AAAAGCACTGTTTGTAATCTCAGCAACGGAAAGTTGCTCATGGTATGCTTTCTCAGCAGAGATAACAGGGGCATAAGAAGAAAGCATGAAATGGATCCTC
G