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Detailed information on CNT30582828


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 4e-142

BLAST vs NONCODE:
NONGMAT000219, E-value = 3e-58

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Echinochloa crusgalliOryza sativa36.644.9989.49314forward
CNT30677760Echinochloa crusgalliSetaria viridis56.6453.5892.18486forward
CNT30522101Echinochloa crusgalliSetaria italica67.4854.6291.88579forward
CNT30640127Echinochloa crusgalliNymphaea colorata32.0534.4684.36275forward
CNT30533600Echinochloa crusgalliEucalyptus grandis33.175.9489.44284forward
CNT30547493Echinochloa crusgalliIpomoea triloba62.5948.0386.22537forward
CNT30517711Echinochloa crusgalliJuglans regia25.2940.9486.18217forward
CNT30702815Echinochloa crusgalliQuercus lobata19.2344.8485.45165forward
CNT30371538Echinochloa crusgalliArabidopsis thaliana50.4791.1683.37433forward
CNT30501067Echinochloa crusgalliCoffea canephora35.942.684.09308forward
CNT30618173Echinochloa crusgalliSesamum indicum31.9334.5585.4274forward
CNT30729860Echinochloa crusgalliCorchorus capsularis58.6254.3885.09503forward
CNT3071007Echinochloa crusgalliQuercus suber42.1970.8483.43362forward
CNT30379228Echinochloa crusgalliManihot esculenta68.7667.6685.93590forward
CNT30507454Echinochloa crusgalliNicotiana attenuata40.6853.7885.1349forward
CNT30712730Echinochloa crusgalliGlycine max42.8971.8884.51368forward
CNT3098615Echinochloa crusgalliSolanum tuberosum27.6246.286.5237forward
CNT30177039Echinochloa crusgalliSecale cereale76.6948.4589.82658forward
CNT30295550Echinochloa crusgalliTriticum aestivum61.3175.6890.3526forward
CNT30224141Echinochloa crusgalliHordeum vulgare41.3852.2189.58355forward
CNT30391405Echinochloa crusgalliTriticum turgidum60.0267.8590.49515forward
CNT3085161Echinochloa crusgalliVigna radiata33.140.5185.21284forward
CNT30555384Echinochloa crusgalliOryza glaberrima57.3457.5488.62492forward
CNT30144939Echinochloa crusgalliMedicago truncatula27.0447.6483.62232forward
CNT30439881Echinochloa crusgalliAegilops tauschii59.5666.6290.22511forward
CNT30249355Echinochloa crusgalliAvena sativa54.6662.3791.04469forward
CNT30655883Echinochloa crusgalliTriticum dicoccoides67.8381.5190.03582forward
CNT3059767Echinochloa crusgalliArabidopsis lyrata25.4130.7583.49218forward
CNT3075301Echinochloa crusgalliBrassica juncea21.9135.484.04188forward
CNT30265526Echinochloa crusgalliBrassica rapa52.3345.2285.3449forward
CNT30445850Echinochloa crusgalliSaccharum spontaneum76.6972.3191.64658forward
CNT30136973Echinochloa crusgalliLolium perenne27.6256.4390.3237forward
CNT30953Echinochloa crusgalliZea mays69.2362.7992.09594forward
CNT3041219Echinochloa crusgalliChlamydomonas reinhardtii25.1737.8989.81216forward
CNT30229012Echinochloa crusgalliAnanas comosus31.3532.4586.62269forward
CNT30219368Echinochloa crusgalliKalanchoe fedtschenkoi15.7323.1288.15135forward
CNT30208739Echinochloa crusgalliHelianthus annuus23.7851.6588.24204forward
CNT30624589Echinochloa crusgalliDaucus carota12.3521.3789.62106forward
CNT30689745Echinochloa crusgalliTriticum urartu56.1863.2590.04482forward
CNT30721351Echinochloa crusgalliTriticum spelta29.3738.0791.27252forward
CNT30340361Echinochloa crusgalliEragrostis tef20.433.4691.43175forward
CNT30361562Echinochloa crusgalliSorghum bicolor62.3554.191.96535forward
CNT30597072Echinochloa crusgalliOryza meridionalis39.9847.2588.34343forward
CNT30371316Echinochloa crusgalliOryza glumipatula55.5940.4288.68477forward
CNT30482824Echinochloa crusgalliChara braunii34.538.981.42296forward
CNT30430260Echinochloa crusgalliPapaver somniferum24.5936.2585.31211forward
CNT30570163Echinochloa crusgalliVitis vinifera53.7355.6884.16461forward
CNT3052700Echinochloa crusgalliAmborella trichopoda15.6242.4186.57134forward
CNT30106557Echinochloa crusgalliOryza longistaminata22.9692.0689.85197forward
CNT3024728Echinochloa crusgalliPopulus trichocarpa31.3533.1386.99269forward
CNT30119652Echinochloa crusgalliCitrus clementina25.762980.09221forward
CNT30148523Echinochloa crusgalliBrachypodium distachyon28.0937.3688.8241forward
CNT30104125Echinochloa crusgalliOryza rufipogon76.6949.8188.45658forward
CNT30578324Echinochloa crusgalliOryza barthii41.9636.6688.06360forward
CNT30117950Echinochloa crusgalliOryza nivara58.9761.0488.93506forward
CNT30593783Echinochloa crusgalliEragrostis curvula22.4936.5589.64193forward
CNT30558847Echinochloa crusgalliPanicum hallii46.7454.3492.52401forward
CNT30333509Echinochloa crusgalliCynara cardunculus17.4827.2784150forward
CNT30724701Echinochloa crusgalliLupinus angustifolius6952.4485.14592forward

Expression of CNT30582828

Peptides detected in this lncRNA

>peptide 1 (40 aa)
HNDVHDNPVAMQGEQNETSLTTSCCCKPHTGDREFKPTDT*

>peptide 2 (29 aa)
MRQVLQHHVVVNHTQATESSNQQTRDRDT*

>peptide 3 (76 aa)
MVVRASRADHGKSLTQQHQEKSSTHHPRHPPHHHQTQHRPPHSPSQEQQGPHGPQRTHPPPCPHPRTSARRHAWRT*

>peptide 4 (59 aa)
MVRFVLMVATAALTSLGTTSPRYIRQQAMYLPWRGSHLAIMEDGSKALLVISATDNCSW*

>peptide 5 (56 aa)
MPSPTYQCTKARLAYMRSNLWSMREKTSTTLVELEIMHTARCTLARSPPGTTLGGW*

Sequence

>CNT30582828
CATAACGACGTTCATGATAACCCAGTAGCAATGCAGGGTGAACAAAATGAGACAAGTCTTACAACATCATGTTGTTGTAAACCACACACAGGCGACAGAG
AGTTCAAACCAACAGACACGTGACAGAGACACATAACATGGTAGTACGAGCCTCTCGGGCAGATCACGGGAAAAGTCTGACACAACAGCACCAGGAAAAG
TCTAGTACTCATCACCCTCGTCACCCTCCTCACCATCATCAAACTCAGCACCGACCTCCTCATAGTCCTTCTCAAGAGCAGCAAGGTCCTCACGGGCCTC
AGAGAACTCACCCTCCTCCATGCCCTCACCCACGTACCAGTGCACGAAGGCACGCTTGGCGTACATGAGGTCGAACTTGTGGTCGATGCGGGAGAAGACC
TCTACCACACTGGTGGAGTTGGAGATCATGCACACAGCACGCTGCACCTTGGCCAGATCACCACCGGGCACCACACTGGGGGGCTGGTAGTTGATACCGC
ACTTGAAACCAGTCGGGCACCAGTCCACGAACTGGATGGTGCGCTTTGTCTTGATGGTGGCCACAGCAGCATTGACATCCTTGGGCACCACATCTCCACG
GTACATAAGGCAGCAGGCCATGTACTTGCCGTGGCGTGGGTCACACTTGGCCATCATGGAGGATGGCTCAAAGGCACTGTTGGTGATCTCAGCCACGGAC
AACTGCTCGTGGTAGGCCTTCTCAGCAGAGATCACTGGGGCATAGGACGAAAGCATGAAGTGGATCCTTGGGTAGGGCACCAGATTGGTCTGGAACTCAT
TTACATCCACGTTCAGAGCACCATCAAACCTCAGGGAGGCTGTCAGAGATGAGATGAC