« Back to Populus trichocarpa search


Detailed information on CNT3024647


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FT36|TBA_DAUCA, E-value = 8e-79

BLAST vs NONCODE:
NONGMAT000220, E-value = 3e-69

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Populus trichocarpaOryza sativa61.263.7880.13317forward
CNT30678049Populus trichocarpaSetaria viridis85.1474.2483.45441forward
CNT30521842Populus trichocarpaSetaria italica65.0636.5183.38337forward
CNT30640127Populus trichocarpaNymphaea colorata64.4841.8585.93334forward
CNT30317272Populus trichocarpaCorylus avellana30.8941.1388.12160forward
CNT30372848Populus trichocarpaArabidopsis thaliana24.7121.3388.28128forward
CNT30501067Populus trichocarpaCoffea canephora58.8842.1982.3305forward
CNT30727923Populus trichocarpaCorchorus capsularis63.1327.6290.83327forward
CNT3071006Populus trichocarpaQuercus suber56.7660.8781.29294forward
CNT30712809Populus trichocarpaGlycine max63.7198.5183.94330forward
CNT30296175Populus trichocarpaTriticum aestivum41.773.9784.26216forward
CNT30391993Populus trichocarpaTriticum turgidum41.790.7684.26216forward
CNT30562914Populus trichocarpaActinidia chinensis16.0227.384.3483forward
CNT30435344Populus trichocarpaAegilops tauschii31.6652.7382.93164forward
CNT3075316Populus trichocarpaBrassica juncea48.4684.5185.26251forward
CNT30135921Populus trichocarpaLolium perenne28.3839.187.07147forward
CNT301007Populus trichocarpaZea mays61.9760.6881.62321forward
CNT30606894Populus trichocarpaGossypium raimondii63.3289.8689.94328forward
CNT30648424Populus trichocarpaRosa chinensis32.0551.7189.16166forward
CNT30129276Populus trichocarpaCorymbia citriodora24.7130.6289.06128forward
CNT30716286Populus trichocarpaMalus domestica golden64.2925.588.59333forward
CNT30689747Populus trichocarpaTriticum urartu31.6653.4284.15164forward
CNT30720138Populus trichocarpaTriticum spelta32.0548.2687.35166forward
CNT30362155Populus trichocarpaSorghum bicolor56.5626.8682.59293forward
CNT30595858Populus trichocarpaOryza meridionalis22.7810.687.29118forward
CNT30359416Populus trichocarpaLactuca sativa31.4722.882.82163forward
CNT30371316Populus trichocarpaOryza glumipatula61.9727.281.93321forward
CNT30331462Populus trichocarpaDioscorea rotundata35.7135.9983.24185forward
CNT30147962Populus trichocarpaBrachypodium distachyon32.2449.2686.23167forward
CNT30100745Populus trichocarpaOryza rufipogon22.29.9888.7115forward
CNT30575645Populus trichocarpaOryza barthii60.6237.0383.12314forward
CNT30579614Populus trichocarpaEchinochloa crusgalli30.1239.4986.54156forward
CNT30117821Populus trichocarpaOryza nivara67.7631.6581.77351forward
CNT30174517Populus trichocarpaVigna angularis26.4568.1681.75137forward
CNT30726253Populus trichocarpaLupinus angustifolius64.6792.0383.88335forward
CNT3040082Populus trichocarpaMarchantia polymorpha59.6573.5780.26309forward

Expression of CNT3024647

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MTVGSRSTKTARGTCFPAPVSLKKVLKASSPPPTVLSLGI*

>peptide 2 (43 aa)
LRDKPVEVGVGGSLNVKRTLADIIDSFIVKKHSHICVFQKGVS*

Sequence

>CNT3024647
ACCTGAGAGATAAGCCTGTTGAGGTTGGTGTAGGTGGGTCGCTCAATGTCAAGAGAACGCTTGCAGATATCATAGATAGCTTCATTGTCAAGAAGCACAG
CCACATCTGTGTGTTCCAAAAGGGAGTGAGTTGAGAGAACACTGTTGTAGGGCTCAACAACAGATGTGGACACCTGAGGAGATGGATACACAGTGAAACC
CAACTTGGATTTCTTTCCATAGTCAACAGACAAACGCTCCAAGAGAAGGGACCCAAGACCAGATCCAGTACCACCACCAACAGCATTGAATACTAGGAAG
CCTTGCAGACCAGTACAGTTGTCAGCGAGCTTTCGGATACGGTCCAAGCACAGGGTGGAAAAGTTGGCGGTAAGTTCCAGTCCTGACTTCATCAATGACA
GTGGGCTCAAGATCTACAAAGACAGCACGAGGGACGTGCTTCCCGGCACCAGTTTCACTGAAAAAGGTGTTAAAGGCATCATCCCCTCCACCAACAGTCT
TGTCACTTGGCATCTGAC