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Detailed information on CNT30119652


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Citrus clementinaOryza sativa22.0524.0779.76168forward
CNT30677979Citrus clementinaSetaria viridis2923.2983.26221forward
CNT30533600Citrus clementinaEucalyptus grandis2959.0980.54221forward
CNT30371538Citrus clementinaArabidopsis thaliana16.9327.1682.17129forward
CNT30501067Citrus clementinaCoffea canephora29.1330.7181.53222forward
CNT30618173Citrus clementinaSesamum indicum22.8321.9482.76174forward
CNT30727924Citrus clementinaCorchorus capsularis24.1519.2584.24184forward
CNT30379228Citrus clementinaManihot esculenta2925.3482.81221forward
CNT30507454Citrus clementinaNicotiana attenuata29.1334.2181.53222forward
CNT30712730Citrus clementinaGlycine max28.6142.5881.19218forward
CNT3098615Citrus clementinaSolanum tuberosum27.5640.9480210forward
CNT30184570Citrus clementinaSecale cereale27.0332.4982.52206forward
CNT30295408Citrus clementinaTriticum aestivum29.1335.8182.88222forward
CNT30392462Citrus clementinaTriticum turgidum29.1354.6882.88222forward
CNT30555281Citrus clementinaOryza glaberrima27.0324.8879.61206forward
CNT30144688Citrus clementinaMedicago truncatula10.522.5486.2580forward
CNT30439881Citrus clementinaAegilops tauschii29.1328.9481.08222forward
CNT30247895Citrus clementinaAvena sativa27.0327.4782.52206forward
CNT30655883Citrus clementinaTriticum dicoccoides29.1331.0983.33222forward
CNT30445643Citrus clementinaSaccharum spontaneum29.1325.0381.98222forward
CNT30136973Citrus clementinaLolium perenne24.1543.8181.52184forward
CNT30953Citrus clementinaZea mays27.6922.383.89211forward
CNT30208739Citrus clementinaHelianthus annuus17.1933.1684.73131forward
CNT30689745Citrus clementinaTriticum urartu24.1524.1582.07184forward
CNT30721298Citrus clementinaTriticum spelta12.9930.4682.8399forward
CNT30570163Citrus clementinaVitis vinifera23.6221.7482.22180forward
CNT3052700Citrus clementinaAmborella trichopoda10.525.3286.2580forward
CNT30106557Citrus clementinaOryza longistaminata9.5834.1186.373forward
CNT30148523Citrus clementinaBrachypodium distachyon23.3627.681.46178forward
CNT30100634Citrus clementinaOryza rufipogon9.5820.9889.0473forward
CNT30575645Citrus clementinaOryza barthii27.0324.2982.04206forward
CNT30582828Citrus clementinaEchinochloa crusgalli2925.7680.09221forward
CNT30117950Citrus clementinaOryza nivara27.0324.8579.61206forward
CNT30558847Citrus clementinaPanicum hallii27.4328.3281.82209forward
CNT30726259Citrus clementinaLupinus angustifolius29.1326.7882.43222forward

Expression of CNT30119652

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MTKWAMVDGCAELMKRRRKRAMIGSCVDY*

>peptide 2 (35 aa)
MKRRGKRAMVAGCVELMERKRKWLAAVLRFEKKKL*

>peptide 3 (40 aa)
MFSFMKLMPNSRCYFCPMQVEFGPNYPNSSGSGLGPNYFVI

Sequence

>CNT30119652
CTCGTATCATATCTATTTCACCCGAAAAAGTAAAATAGTCAACACTTGAATTCAGTTGGGCAGCAGTCAACAAATTGAATGGTGCGCTTGGTCTTGATGG
TTGCAACGGCAGCATTCACATCTTAGGGAACTACATCACCTCCGTAAATCGGGCAGCAAGCCGTGTACTTGCCAAGGTGAAGATCACACCTGGCCATCAT
GGACGAAGGCTCAAATGCGCTGTTGATGATCTCGGCAACAGAGAGCTGCTCATGATAGGCCTTGTCGCGAAGGCGGCGAAGCGGCGAAACGACGATGACG
AAATGGGCAATGGTTGATGGCTGTGCTGAATTGATGAAAAGGAGAAGAAAAAGAGCAATGATTGGCAGCTGTGTTGACTATTGAATTAATGAAGAGAAGA
GGAAAACGGGCAATGGTTGCCGGCTGTGTTGAATTGATGGAGAGAAAAAGAAAATGGTTGGCGGCTGTGTTGAGATTTGAGAAGAAGAAGTTGTAAAGTG
TAAACTAGGGTTTTTTCTTTATTTATTTTTTTTTAATTTTTTGCCTTTTTATTTATATTAAAAAAATTTAAAAATATAATATTAATAATAAAGATATCCA
ATATGTGAGTTCACCTAATCCTGGATCCGGACTCATGTATGTTCAGTTTCATGAAATTGATGCCAAATTCCAGATGCTATTTCTGTCCTATGCAAGTTGA
ATTCGGCCCAAATTATCCAAATTCATCAGGGTCTGGGCTTGGTCCGAATTATTTTGTCATCC