« Back to Triticum turgidum search


Detailed information on CNT30387246


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40034|EF1A2_HORVU, E-value = 0.0

BLAST vs NONCODE:
NONBNAT001751, E-value = 3e-179

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692364Triticum turgidumOryza sativa76.9878.6988.71886forward
CNT30677701Triticum turgidumSetaria viridis58.397.9687.33671forward
CNT30521010Triticum turgidumSetaria italica76.881.188.57884forward
CNT30639730Triticum turgidumNymphaea colorata5163.8784.5587forward
CNT30535563Triticum turgidumEucalyptus grandis68.8197.0684.09792forward
CNT30316757Triticum turgidumCorylus avellana61.4259.0284.3707forward
CNT30546799Triticum turgidumIpomoea triloba75.1570.4483.01865forward
CNT30518094Triticum turgidumJuglans regia47.9658.9787.14552forward
CNT30371709Triticum turgidumArabidopsis thaliana53.4395.585.37615forward
CNT30274113Triticum turgidumChenopodium quinoa38.0570.1985.62438forward
CNT3021232Triticum turgidumCitrullus lanatus76.1970.8481.07877forward
CNT30727590Triticum turgidumCorchorus capsularis75.6764.2884.39871forward
CNT30380230Triticum turgidumManihot esculenta76.2836.1983.37878forward
CNT30525464Triticum turgidumPhaseolus vulgaris36.2373.8183.69417forward
CNT30194937Triticum turgidumPisum sativum76.1987.7981.76877forward
CNT30160120Triticum turgidumPistacia vera67.8562.8385.66781forward
CNT30287202Triticum turgidumTriticum aestivum40.9265.5196.6471forward
CNT30564256Triticum turgidumActinidia chinensis48.2247.6885.95555forward
CNT3084148Triticum turgidumVigna radiata50.4835.6784.17581forward
CNT30541587Triticum turgidumBrassica napus76.875.1783.48884forward
CNT30233904Triticum turgidumBrassica oleracea76.896.483.6884forward
CNT30173274Triticum turgidumTrifolium pratense72.9862.4582.38840forward
CNT30146334Triticum turgidumMedicago truncatula53.6162.0781.52617forward
CNT30247994Triticum turgidumAvena sativa75.9359.0589.36874forward
CNT30665783Triticum turgidumTriticum dicoccoides73.0792.3286.68841forward
CNT30310177Triticum turgidumCamelina sativa76.1175.5283.9876forward
CNT3059230Triticum turgidumArabidopsis lyrata76.2873.0483.49878forward
CNT3079066Triticum turgidumBrassica juncea76.874.0484.28884forward
CNT30614135Triticum turgidumArabis alpina65.1648.0884750forward
CNT30598511Triticum turgidumFraxinus excelsior41.5373.4384.52478forward
CNT30449495Triticum turgidumSaccharum spontaneum76.4672.3187.05880forward
CNT30132437Triticum turgidumLolium perenne77.1573.8889.19888forward
CNT3011166Triticum turgidumZea mays76.862.5287.78884forward
CNT30608730Triticum turgidumGossypium raimondii32.7562.8383.29377forward
CNT30127375Triticum turgidumCorymbia citriodora47.2697.4982.17544forward
CNT30685098Triticum turgidumTriticum urartu48.4837.9692.47558forward
CNT30350898Triticum turgidumEragrostis tef76.3778.987.71879forward
CNT30480841Triticum turgidumArabidopsis halleri34.4963.9386.9397forward
CNT30368770Triticum turgidumSorghum bicolor60.1296.6587.28692forward
CNT30355521Triticum turgidumLactuca sativa48.9159.0183.3563forward
CNT30427598Triticum turgidumPapaver somniferum75.563.5282.85869forward
CNT30706337Triticum turgidumPrunus avium72.8171.8783.89838forward
CNT3024873Triticum turgidumPopulus trichocarpa32.8467.0287.3378forward
CNT3037774Triticum turgidumCucumis melo40.8360.886.38470forward
CNT30101053Triticum turgidumOryza rufipogon29.5440.9191.18340forward
CNT30580076Triticum turgidumEchinochloa crusgalli34.4930.0189.42397forward
CNT30496874Triticum turgidumDigitaria exilis76.878.8688.12884forward
CNT30116111Triticum turgidumOryza nivara29.1938.491.07336forward
CNT30594443Triticum turgidumEragrostis curvula76.9876.3187.58886forward
CNT30603820Triticum turgidumOryza punctata76.881.9388.24884forward
CNT30176122Triticum turgidumVigna angularis73.9475.1880.02851forward
CNT30113122Triticum turgidumFicus carica40.3155.987.72464forward
CNT30724026Triticum turgidumLupinus angustifolius73.558.7582.39846forward
CNT3050294Triticum turgidumCucumis sativus40.3175.6983.41464forward

Expression of CNT30387246

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MSRTAKRPRGGYWAKVSTTMGLVGIILTNPASPFLRNLGAASISLPDRRSILVWISANLTAMWDVWQSSTGA*

>peptide 2 (93 aa)
MMMTWAVKLAASLAGSSLELEATYPRLRSLTATFLTLKPTLSPGSASRRDSWCISTDFTSVVRPVGPKVTTMPGLMTPVSTRPTGTVPMPPIL*

Sequence

>CNT30387246
CTCGACACAAATAACAGAAGCTTAACAAGTTCGCAAATCCGCTAACACGACTATCACCACCACCGTATACCGCCGCCACCACCATAGATGTGGTAAAGAA
CCACCAACGACGCCACCGCCCGACACCATCTCATTTCTTCTTGGCCGCAGCCTTGGTCACCTTGGCGCCGGTTGGATCCTTCTTCTCCACGGCCTTGATA
ACGCCCACGGCAACCGTCTGCCTCATGTCGCGCACAGCAAAGCGGCCCAGGGGAGGGTACTGGGCGAAGGTCTCCACCACCATGGGCTTGGTGGGGATCA
TCTTGACGAACCCGGCATCACCGTTCTTGAGGAACTTAGGCGCCGCCTCAATCTCCTTGCCGGACCGCCGGTCGATCTTGGTCTGGATCTCAGCAAACTT
GACGGCGATGTGGGACGTGTGGCAGTCCAGCACCGGGGCATAGCCATTGCTGATCTGGCCAGGGTGGTTCATGATGATGACCTGGGCGGTGAAGTTGGCA
GCCTCCTTGGCAGGGTCGTCCTTGGAGTTGGAAGCGACATACCCTCGCTTGAGATCCTTGACAGCCACGTTCTTGACGTTGAAGCCGACGTTGTCACCAG
GAAGCGCCTCCAGGAGAGACTCGTGGTGCATCTCAACGGACTTCACCTCAGTGGTCAGGCCAGTAGGACCAAAGGTGACAACCATGCCTGGCTTGATGAC
TCCAGTCTCAACACGCCCCACTGGCACAGTTCCAATGCCACCAATCTTGTAGACGTCCTGAAGGGGAAGACGCAGGGGCTTGTCGGAGGGCCTCTTGGGC
TCATTGATCTGGTCCAGGGCCTCAAGAAGGGTGGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCGCCCTCAAACCCAGAGATGG
GAACGAAGGGAACCTTGTCAGGGTTGTAACCGACCTTCTTCAGGTATGAAGAGACTTCCTTGACAATTTCTTCATAACGGGCCTTCGAGTACTTGGGAGT
GGTGGCATCCATCTGGAACATATCATAAGAGCAATCTCATCAGATAAACAGAATTATTGGAAAGTAACAATGCAAACAAACACAAATGAGAAACAGCATA
CATGTATATACCCAAGTGCTGATGGAAGTTGCACAGAATAAGAGATAACAA