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Detailed information on CNT3084148


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONGMAT001702, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Vigna radiataOryza sativa35.6736.8985.03581forward
CNT30677701Vigna radiataSetaria viridis31.0673.8783.99506forward
CNT30521010Vigna radiataSetaria italica35.653.2185.69580forward
CNT30639730Vigna radiataNymphaea colorata21.8538.7484.55356forward
CNT30535563Vigna radiataEucalyptus grandis36.0371.9486.37587forward
CNT30316757Vigna radiataCorylus avellana35.7348.5885.22582forward
CNT30546799Vigna radiataIpomoea triloba35.2446.7483.97574forward
CNT30518094Vigna radiataJuglans regia33.8258.8785.3551forward
CNT30371709Vigna radiataArabidopsis thaliana26.3466.6184.85429forward
CNT30274113Vigna radiataChenopodium quinoa24.2563.384.81395forward
CNT3021235Vigna radiataCitrullus lanatus35.6782.8885.37581forward
CNT30727586Vigna radiataCorchorus capsularis34.3843.4186.79560forward
CNT30160120Vigna radiataPistacia vera35.646.6686.72580forward
CNT30387246Vigna radiataTriticum turgidum35.6750.4884.17581forward
CNT30564257Vigna radiataActinidia chinensis34.4448.9585.03561forward
CNT30541591Vigna radiataBrassica napus34.7548.1385.16566forward
CNT30238010Vigna radiataBrassica oleracea34.6846.1684.42565forward
CNT30173274Vigna radiataTrifolium pratense32.8439.7886.92535forward
CNT30246955Vigna radiataAvena sativa35.6732.9284.17581forward
CNT30310418Vigna radiataCamelina sativa34.7548.7983.92566forward
CNT3059230Vigna radiataArabidopsis lyrata34.684783.36565forward
CNT3077042Vigna radiataBrassica juncea34.7547.0185.51566forward
CNT30614135Vigna radiataArabis alpina36.137.6985.2588forward
CNT30449495Vigna radiataSaccharum spontaneum34.1945.7785.64557forward
CNT30132437Vigna radiataLolium perenne35.648.2581.38580forward
CNT3011166Vigna radiataZea mays35.641.0284.66580forward
CNT30127375Vigna radiataCorymbia citriodora23.0867.3884.04376forward
CNT30350898Vigna radiataEragrostis tef34.5650.5485.61563forward
CNT30480841Vigna radiataArabidopsis halleri24.0663.1283.42392forward
CNT30368770Vigna radiataSorghum bicolor34.7579.0584.98566forward
CNT30355521Vigna radiataLactuca sativa34.0158.0785.38554forward
CNT30427756Vigna radiataPapaver somniferum34.9343.6385.06569forward
CNT30706337Vigna radiataPrunus avium35.795085.59583forward
CNT30496962Vigna radiataDigitaria exilis35.651.685.69580forward
CNT30594443Vigna radiataEragrostis curvula35.6750.0484.85581forward
CNT30603820Vigna radiataOryza punctata35.5453.6685.49579forward
CNT30113122Vigna radiataFicus carica29.0456.9983.51473forward
CNT3050294Vigna radiataCucumis sativus31.2583.0385.85509forward

Expression of CNT3084148

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MFTSLPILRNSSFKTTSGGINDQHSTVSLGCPCNHVLNEIPVSGSINNSAVVLGGFKLPQRNINCNPSFTLSLKLVKHPGILE*

>peptide 2 (54 aa)
MVHLDRLNFSCQSSWCKSHHHSRLDDTSFNTSDRNSSDSSNLVDILKRKPEGLV*

>peptide 3 (30 aa)
MASGSRLPRVDMANDHNTDVNLFLTHNCLWK

>peptide 4 (30 aa)
MISTAQSAWDVPVIMFLMKSLCPGASITVQ*

>peptide 5 (31 aa)
MTSCSSQQLPSRTSQSHACQFLQACKSDGQW*

>peptide 6 (32 aa)
MTQEYKQETSIYCNHPLMNHPARFTSSSGQPW*

Sequence

>CNT3084148
CATCAGACTAAATAAAATTCCAAGCAGGGATATAAAACACGAATATAAAAAGTCTGATATTTAAAATGCAAACAAACAACACAGCAAAGCGGTAAAACTT
GCTGCGCTTACAAAAATGTAATCAGGGGTTCTCACAAAATCACAAAAACACATAAAAACACATAATAATAATAAAAGAGCCGCCACCGTCGATCAAGAAC
CCAATTCTGGGAACAAAAGTTGGGAGATGATGGTGGAAACTTCAAACTAAGTACGAAAAACAATCTACCTAGCGATGACACAAGAGTACAAGCAAGAAAC
CAGCATTTATTGTAACCATCCCCTGATGAATCACCCAGCACGATTCACTTCTTCTTCTGGGCAGCCTTGGTGACCTTGGCTCCAGTGGGATCCTTCTTCT
CAACGTTCTTGATGACTCCCACAGCAACAGTTTGACGCATGTCCCTCACAGCAAAACGTCCAAGAGAACAGGGGCATAGCCATTTCCAATCTGACCAGGG
TGGTTCATGATGATAACCTGGGAGGTGAAGTTAGCAGCCTCCTTAGCAGGATCATCCTTGGAGTTTGAAGCAACATAACCACGCTTGAGATCTTTAACAG
CAACATTCTTCACATTGAAACCGACGTTGTCACCAGGGAGAGCTTCTGTGAGAGCTTCATGGTGCATCTCGACAGACTTAACTTCAGTTGTCAGTCCAGT
TGGTGCAAAAGTCACCACCATTCCAGGCTTGATGACACCAGTTTCAACACGTCCGACAGGAACAGTTCCGATTCCTCCAATCTTGTAGACATCCTGAAGA
GGAAGCCTGAGGGGCTTGTCTGATGGCCTCTTGGGCTCAGTGATCTGGTCAAGTGCCTCGAGCAAGGTAGGTCCCTTGTACCAGTCAAGGTTTGTGGACC
TCTCAATCATGTTGTCTCCCTCAAAACCAGAGATTGGAACAAAAGGAATCTTGTCTGGATTGTATCCCACTTTCTTCAAGTAGGAGGAGACTTCCTTCAC
AATTTCATCATACCTAGCCTTGGAGTACTTGGGTGTAGTAGCATCCATCTGATCCACAGAAAGACAACAACATCAGTTAAAACAAATTAAATTCAAAAGT
AATCAATACAAGAGAAATTATTCAAAGGCTTAAAATCTAAAACATAATTAACCTTGTTACAGCAACAAATCATCTGCTTCACACCAAGAGTGAATGAAAG
AAGAGCATGTTCACGAGTCTGCCCATCCTTAGAAATTCCAGCTTCAAAACCACCAGTGGTGGAATCAATGATCAGCACAGCACAGTCAGCTTGGGATGTC
CCTGTAATCATGTTCTTAATGAAATCCCTGTGTCCGGGAGCATCAATAACAGTGCAGTAGTACTTGGTGGTTTCAAACTTCCACAACGCAATATCAATTG
TAATCCCTCTTTCACGCTCAGCCTTAAGCTTGTCAAGCACCCAGGCATACTTGAATGACCTCTTGTTCATCTCAGCAGCTTCCTTCTCGAACCTCTCAAT
CACACGCTTGTCAATTCCTCCAAGCTTGTAAATCAGATGGCCAGTGGTAGTAGACTTCCCAGAGTCGACATGGCCAATGACCACAATACTGATGTGAACC
TTTTCCTTACCCATAATTGCCTTTGGAAA