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Detailed information on CNT30685098


BLAST search results

BLAST vs Swiss-Prot:
sp|Q03033|EF1A_WHEAT, E-value = 5e-118

BLAST vs NONCODE:
NONMEST004097, E-value = 1e-148

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Triticum urartuOryza sativa36.4634.0391.42536forward
CNT30677701Triticum urartuSetaria viridis30.8866.2890.09454forward
CNT30521010Triticum urartuSetaria italica35.9248.4490.72528forward
CNT30535563Triticum urartuEucalyptus grandis36.0564.9585.09530forward
CNT30316757Triticum urartuCorylus avellana33.240.7388.32488forward
CNT30546799Triticum urartuIpomoea triloba34.3541.1286.53505forward
CNT30518094Triticum urartuJuglans regia32.9351.7188.84484forward
CNT30371709Triticum urartuArabidopsis thaliana26.6760.8788.78392forward
CNT30618435Triticum urartuSesamum indicum23.6770.8886.21348forward
CNT30274113Triticum urartuChenopodium quinoa23.455.1386.92344forward
CNT3021028Triticum urartuCitrullus lanatus32.7938.8184.85482forward
CNT30380230Triticum urartuManihot esculenta35.5821.5687.76523forward
CNT30525464Triticum urartuPhaseolus vulgaris27.6972.0486407forward
CNT30629544Triticum urartuVigna unguiculata26.6751.8586.73392forward
CNT30505987Triticum urartuNicotiana attenuata15.5869.690.83229forward
CNT30160120Triticum urartuPistacia vera35.9242.4888.64528forward
CNT30224987Triticum urartuHordeum vulgare20.0710096.27295forward
CNT30387246Triticum urartuTriticum turgidum37.9648.4892.47558forward
CNT30564257Triticum urartuActinidia chinensis32.9342.2387.19484forward
CNT30541590Triticum urartuBrassica napus30.6838.7886.47451forward
CNT30233993Triticum urartuBrassica oleracea34.7647.5886.11511forward
CNT30173274Triticum urartuTrifolium pratense32.7935.8487.34482forward
CNT30146188Triticum urartuMedicago truncatula24.6946.2486.5363forward
CNT30246955Triticum urartuAvena sativa37.2130.9992.32547forward
CNT30665783Triticum urartuTriticum dicoccoides32.9953.2496.08485forward
CNT30310177Triticum urartuCamelina sativa35.7845.3488.21526forward
CNT3059230Triticum urartuArabidopsis lyrata35.9243.9386.55528forward
CNT3077042Triticum urartuBrassica juncea35.8543.7785.96527forward
CNT30598511Triticum urartuFraxinus excelsior32.1172.584.96472forward
CNT30449495Triticum urartuSaccharum spontaneum35.5842.9789.87523forward
CNT30132437Triticum urartuLolium perenne35.6543.5989.31524forward
CNT3011166Triticum urartuZea mays35.9237.3490.34528forward
CNT30127375Triticum urartuCorymbia citriodora21.5656.8186.75317forward
CNT30624959Triticum urartuDaucus carota22.8698.8285.71336forward
CNT30350898Triticum urartuEragrostis tef35.5146.8690.8522forward
CNT30480841Triticum urartuArabidopsis halleri25.3159.986.83372forward
CNT30368770Triticum urartuSorghum bicolor35.3772.6389.23520forward
CNT30355521Triticum urartuLactuca sativa31.949.1685.29469forward
CNT30151899Triticum urartuPrunus persica22.5930.187.05332forward
CNT30427598Triticum urartuPapaver somniferum35.1737.7986.27517forward
CNT30706337Triticum urartuPrunus avium35.5844.8588.15523forward
CNT3052982Triticum urartuAmborella trichopoda23.2726.1584.5342forward
CNT3037774Triticum urartuCucumis melo31.9760.888.51470forward
CNT30101053Triticum urartuOryza rufipogon23.2741.1692.98342forward
CNT30580076Triticum urartuEchinochloa crusgalli26.6729.6391.07392forward
CNT30496874Triticum urartuDigitaria exilis35.9247.190.72528forward
CNT30116111Triticum urartuOryza nivara22.9938.6392.01338forward
CNT30594443Triticum urartuEragrostis curvula35.9245.4891.29528forward
CNT30603820Triticum urartuOryza punctata35.8548.8491.46527forward
CNT30176122Triticum urartuVigna angularis34.6945.0584.9510forward
CNT30113122Triticum urartuFicus carica28.5750.685.24420forward
CNT30724026Triticum urartuLupinus angustifolius33.233.8986.68488forward
CNT3050294Triticum urartuCucumis sativus30.7573.7483.85452forward

Expression of CNT30685098

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MAALVTLAPVGSFFSTPLMTPTATVCLMSRTAKRPRGG*

Sequence

>CNT30685098
CAGGCAGACAAAACCACAAATGGGATAAGAGCACAATAATGGAATCGAAATAGAGTATTTAAACGACACATCATAGCTCGCACACAGGTGCAGGAGTCGA
AGTGCAACAACGCCCAGAAACACCACTTAACATACACTAAGATTCTCCAAAAAAGACTTGACACTAAAACTTCTGCTAGATAACTCGATGGCAGACACCA
GAGCACTCATTTCTTCTTGATGGCAGCCTTGGTAACCTTGGCGCCGGTGGGGTCCTTCTTCTCAACGCCCTTGATGACACCAACAGCAACCGTTTGTCTC
ATGTCACGCACAGCGAAGCGGCCAAGAGGAGGGTAGGTGAAGTTGGCTGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGATGCAACAAACCCACGCTTCA
GATCCTTGACAGCAACGTTCTTCACGTTGAAGCCGACATTGTCACCAGGAAGCGCCTCCAGGAGGGACTCGTGGTGCATCTCAACAGACTTGACCTCAGT
TGTCAGACCAGTGGGGCCAAAGGTAACAACCATACCAGGCTTGATGACACCAGTCTCAACACGTCCAACAGGCACAGTTCCAATGCCACCAATCTTGTAA
ACATCCTGAAGGGGAAGACGCAGGGGCTTGTCTGAGGGCCTCTTGGGCTCATTGATCTGGTCAAGAGCCTCAAGAAGGGTAGGGCCCTTGTACCAGTCAA
GGTTGGTGGACCTCTCAATCATGTTGTCACCCTCAAACCCAGAGATGGGAACAAAGGGAACCTTCTCAGGGTTGTAGCCGACCTTCTTCAGGTACGATGA
GACTTCCTTGACGATTTCCTCATAACGGGCCTTCGAGTACTTGGGAGTGGTGGCATCCATCTGTGACAGATCATAAGAGCAATCACATCAGATTAAAACA
GATATGGTGAACTAGTAAATCACTAGCATGTAACAATAACAAGAGAAGTGTGTTTAGCAGCATATCTATCATACAATGCAAGTTCCACAGAACAAGTATA
ATAGGCAAACAAACTATTTAGTTTTTAAATTACAACCTCCATAACTAAGTAGAAGACAATTTTACAGTTCAATCAGAGGTAGCAATATATAACAAAGTCG
GTACCAAATGAAGATCCCACTTAGTGAAGTAATGCTAAGAAATCTCCTCTAGTGACCTACTCATACTCAGTGAAGAAATGCTATGAAACAACCAGGATTG
ACACTGGCAATTCAGTGCTACTTGTGAACATGTGCATTTTACTGATTCTGAAGTATATAGCAAAATAGTGGTAGTACTGTGAATTAAGATGTAACTAACC
AAATGAGCAACATATGTTATAATCACAAACCTAAATAAATGGCAGCCAGTTCACATGGAGTTTCTGTACTACTTAACATGGACAGTCATCAAGTAATTCT
CAATCAAAGTGGATAGCAAAACAGTAAACACATCATACGGCTACACATAAGAACAAGCATTGAAAGGTTA