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Detailed information on CNT30316757


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 1e-172

BLAST vs NONCODE:
NONBNAT001751, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Corylus avellanaOryza sativa61.5246.7986.02737forward
CNT30677701Corylus avellanaSetaria viridis56.9399.5687.83682forward
CNT30521010Corylus avellanaSetaria italica61.5267.6187.52737forward
CNT30639730Corylus avellanaNymphaea colorata45.8359.7485.61549forward
CNT30535563Corylus avellanaEucalyptus grandis62.7792.1685.77752forward
CNT30546799Corylus avellanaIpomoea triloba63.3661.8187.09759forward
CNT30518094Corylus avellanaJuglans regia62.0279.3887.89743forward
CNT30371709Corylus avellanaArabidopsis thaliana52.5997.8386.35630forward
CNT30618377Corylus avellanaSesamum indicum31.72101.8884.47380forward
CNT30274113Corylus avellanaChenopodium quinoa39.1575.1686.99469forward
CNT3021232Corylus avellanaCitrullus lanatus60.2758.3284.9722forward
CNT30727590Corylus avellanaCorchorus capsularis61.7754.6189.46740forward
CNT30380230Corylus avellanaManihot esculenta63.0231.1287.42755forward
CNT30525464Corylus avellanaPhaseolus vulgaris48.41102.6584.14580forward
CNT30629525Corylus avellanaVigna unguiculata31.9789.0787.99383forward
CNT30194937Corylus avellanaPisum sativum62.8575.3886.06753forward
CNT30712097Corylus avellanaGlycine max28.7128.8388.37344forward
CNT30160120Corylus avellanaPistacia vera63.0260.7488.74755forward
CNT30637620Corylus avellanaCapsicum annuum20.4512.7689.8245forward
CNT30287202Corylus avellanaTriticum aestivum36.2360.3687.79434forward
CNT30224132Corylus avellanaHordeum vulgare24.4642.7187.71293forward
CNT30387246Corylus avellanaTriticum turgidum59.0261.4284.3707forward
CNT30564256Corylus avellanaActinidia chinensis51.2552.7587.46614forward
CNT30588666Corylus avellanaMusa acuminata27.9668.9385.07335forward
CNT3084148Corylus avellanaVigna radiata48.5835.7385.22582forward
CNT30541590Corylus avellanaBrassica napus63.2765.1887.34758forward
CNT30238010Corylus avellanaBrassica oleracea63.2761.9386.68758forward
CNT30173274Corylus avellanaTrifolium pratense59.4352.9488.62712forward
CNT30146334Corylus avellanaMedicago truncatula40.7349.0988.52488forward
CNT30440472Corylus avellanaAegilops tauschii27.5555.4688.79330forward
CNT30246955Corylus avellanaAvena sativa59.640.4587.11714forward
CNT30665783Corylus avellanaTriticum dicoccoides58.5176.9585.16701forward
CNT30310418Corylus avellanaCamelina sativa63.2765.3487.6758forward
CNT3059230Corylus avellanaArabidopsis lyrata61.8561.6586.77741forward
CNT3078925Corylus avellanaBrassica juncea63.2764.7386.81758forward
CNT30614135Corylus avellanaArabis alpina61.7747.4486.76740forward
CNT30598511Corylus avellanaFraxinus excelsior37.6569.2887.36451forward
CNT30449495Corylus avellanaSaccharum spontaneum59.7758.8387.43716forward
CNT30132437Corylus avellanaLolium perenne58.5158.3284.02701forward
CNT3011166Corylus avellanaZea mays62.2752.7687.13746forward
CNT30608730Corylus avellanaGossypium raimondii37.4874.8387.31449forward
CNT30651330Corylus avellanaRosa chinensis19.9554.291.63239forward
CNT30127375Corylus avellanaCorymbia citriodora43.4193.1986.35520forward
CNT30685098Corylus avellanaTriticum urartu40.7333.288.32488forward
CNT30350898Corylus avellanaEragrostis tef61.5266.1686.57737forward
CNT30480841Corylus avellanaArabidopsis halleri33.1463.9384.89397forward
CNT30368770Corylus avellanaSorghum bicolor55.2692.4687.46662forward
CNT30355521Corylus avellanaLactuca sativa59.7775.0585.2716forward
CNT30151899Corylus avellanaPrunus persica28.2130.6489.05338forward
CNT30427598Corylus avellanaPapaver somniferum62.9455.1286.87754forward
CNT30706337Corylus avellanaPrunus avium63.0264.7588.34755forward
CNT30644842Corylus avellanaCannabis sativa19.256.9390.87230forward
CNT3052982Corylus avellanaAmborella trichopoda28.5526.1586.55342forward
CNT3024315Corylus avellanaPopulus trichocarpa45.2471.0487.64542forward
CNT3037774Corylus avellanaCucumis melo38.6559.990.71463forward
CNT30148140Corylus avellanaBrachypodium distachyon26.4683.4290.22317forward
CNT30100761Corylus avellanaOryza rufipogon28.5559.6986.26342forward
CNT30580076Corylus avellanaEchinochloa crusgalli29.9727.1489.69359forward
CNT30496874Corylus avellanaDigitaria exilis61.5265.7487.38737forward
CNT30116111Corylus avellanaOryza nivara26.9636.9186.38323forward
CNT30594443Corylus avellanaEragrostis curvula59.3561.2487.76711forward
CNT30603820Corylus avellanaOryza punctata61.5268.386.84737forward
CNT30176122Corylus avellanaVigna angularis61.7765.3783.65740forward
CNT30113122Corylus avellanaFicus carica41.0759.2886.38492forward
CNT30724026Corylus avellanaLupinus angustifolius60.2750.1487.4722forward
CNT3050294Corylus avellanaCucumis sativus43.7485.4884.16524forward

Expression of CNT30316757

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MKMSERTIHFFLAADLVTLAPEGSFFSTPLITPTATVWRMSLTAKRPRGGYSEKVSTTMGLVGTQRKSQQPWAWWESS*

>peptide 2 (53 aa)
MGLVGIILIIPASPFFKNLGSFSSSLPERLSILVTSSANLTAMWQVWQSRTGA*

>peptide 3 (35 aa)
MCCHRLSSTQFWVRRPDMQHIKPIEIKLETKPTRN*

>peptide 4 (29 aa)
MGFCQGCNQPSSGRKKLPSQFHHTSPWSI*

Sequence

>CNT30316757
GGTGCCAAAAACAGGTATATAAATACTAAATTAAAAGCCTTAAATTTAAATTAACTCAAAACATCCACAATAAAAGGGTGTTAAAACTCCCGGACTCCAC
CACTGGCAATGTGTTGCCACCGCCTGTCTAGCACCCAGTTCTGGGTGCGACGACCAGACATGCAACACATAAAACCAATAGAAATAAAACTAGAGACAAA
ACCGACTAGAAATTGAAAAGGCACACAGTAATAGAGATATAAATTGTTCACAACATCAATGAAAATGAGTGAACGCACAATTCACTTCTTCTTGGCAGCA
GATTTGGTAACCTTAGCACCAGAGGGATCCTTCTTCTCAACACCCTTGATAACACCAACAGCAACAGTCTGGCGCATGTCCCTAACAGCAAAACGACCAA
GGGGTGGGTACTCAGAGAAAGTCTCAACAACCATGGGCTTGGTGGGTACTCAGAGAAAGTCTCAACAACCATGGGCTTGGTGGGAATCATCTTGATAATC
CCTGCATCACCGTTCTTCAAAAACTTGGGCTCCTTCTCGAGCTCCTTACCAGAACGCCTGTCAATCTTGGTGACAAGTTCAGCAAACTTGACAGCAATGT
GGCAGGTGTGGCAGTCGAGAACTGGGGCATAACCATTTCCAATCTGACCAGGGTGGTTCATGATAATGACCTGAGATGTGAAGTTAGCAGCTTCCCTGGC
AGGGTCATCCTTTGAGTTGGATGCAACAAAACCACGCTTGAGATCCTTCACAGCAACATTCTTGACGTTGAAGCCAACATTGTCACCAGGCAAAGCCTCC
AGAAGAGCCTCGTGGTGCATCTCAACAGACTTAACTTCAGTGGTTAGTCCAGTTGGGCCAAAGGTAACAACCATACCAGGCTTGATGACACCGGTCTCAA
CACGACCAACTGGGACAGTTCCAATACCACCAATCTTGTAAACATCCTGAAGAGGGAGACGGAGAGGCTTGTCTGAGGGCCTCTTGGGTTCAGAGATCAG
GTCAAGAGCATCAAGGAGAGTTGGGCCCTTGTACCAGTCAAGGTTGGTTGACCTCTCAATCATGTTGTCACCCTCGAAACCAGAGATAGGAACAAATGGG
ATTTTGTCAGGGTTGTAACCAACCTTCTTCAGGTAGGAAGAAACTTCCTTCACAATTTCATCATACCTCGCCTTGGAGTATTTAGGGGTAGTTGCATC